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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0017556 through 18771 annotations produced 1 hits


20s proteasome (Pros28.1B):

Annotation Number : CG4569
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017556
Gbrowse : chr2R:20388385-20389757 (-) // 99.65 //
Probeset : 1625706_at
Accessions : protein= NP_611920;, nucleotide= NM_138076;
Pathway : "0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic
Interpro : alpha-subunit complex // inferred from electronic annotation"
FlyMine data for FBgn0017556.
Homophila reports that CG4569 is a close match (2e-22) to human gene P27K;PROS27;PSMA6 (NP_002782), a gene associated with {Myocardial infarcation, susceptibility to} (3).
VDRC has 2 RNAi stocks for FBgn0017556 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye2 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland5 ± 20 of 4 0.15Down
Crop1 ± 00 of 4 0.00Down
Midgut5 ± 10 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut4 ± 00 of 4 0.10Down
Heart2 ± 00 of 4 0.06Down
Fat body1 ± 00 of 4 0.05Down
Ovary2 ± 00 of 4 0.10Down
Testis427 ± 154 of 412.10Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca3 ± 00 of 4 0.10Down
Mated spermatheca2 ± 00 of 4 0.08Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.13Down
Larval Salivary gland5 ± 10 of 4 0.15Down
Larval midgut2 ± 00 of 4 0.07Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.10Down
Larval fat body42 ± 123 of 4 1.20None
Larval trachea2 ± 40 of 4 0.08Down
Larval carcass2 ± 10 of 4 0.08Down
S2 cells (growing)5 ± 10 of 4 0.16Down
Whole fly35 ± 24 of 4

Looking for FBgn0017556. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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