Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0017579 through 18771 annotations produced 1 hits



Minute(3)66D (RpL14):

Annotation Number : CG6253
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017579
Gbrowse : chr3L:8594101-8595499 (+) // 100.0 //
Probeset : 1623914_at
Accessions : protein= NP_523975;, nucleotide= NM_079251;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0017579.
BioGrid reports that CG6253 interacts with CG6522 CG9383 CG9784 CG9986 .
VDRC has 2 RNAi stocks for FBgn0017579 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2967 ± 874 of 4 0.80None
Head4300 ± 1334 of 4 1.10None
Eye5588 ± 1424 of 4 1.47Up
Thoracicoabdominal ganglion4174 ± 944 of 4 1.10None
Salivary gland10085 ± 3694 of 4 2.65Up
Crop5760 ± 2954 of 4 1.50Up
Midgut4941 ± 1634 of 4 1.30Up
Tubule2583 ± 384 of 4 0.70Down
Hindgut4660 ± 1034 of 4 1.20Up
Heart6348 ± 3624 of 4 1.67Up
Fat body5606 ± 8594 of 4 1.48Up
Ovary3256 ± 544 of 4 0.90None
Testis1003 ± 154 of 4 0.30Down
Male accessory glands8232 ± 2604 of 4 2.20Up
Virgin spermatheca4075 ± 2804 of 4 1.07None
Mated spermatheca4374 ± 1004 of 4 1.15None
Adult carcass5461 ± 2754 of 4 1.40Up
Larval CNS2675 ± 2074 of 4 0.70Down
Larval Salivary gland7621 ± 3174 of 4 2.01Up
Larval midgut4537 ± 1194 of 4 1.19Up
Larval tubule4626 ± 594 of 4 1.20Up
Larval hindgut4333 ± 744 of 4 1.14None
Larval fat body7323 ± 8324 of 4 1.90Up
Larval trachea5695 ± 1404 of 4 1.50Up
Larval carcass4558 ± 3034 of 4 1.20None
S2 cells (growing)4430 ± 884 of 4 1.17None
Whole fly3799 ± 2184 of 4

Looking for FBgn0017579. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime