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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0017581 through 18771 annotations produced 1 hits



Lk6 (Lk6):

Annotation Number : CG17342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017581
Gbrowse : chr3R:7578505-7590179 (-) // 100.0 //
Probeset : 1641654_a_at
Accessions : protein= NP_651986; /// NP_731624;, nucleotide= NM_143729; /// NM_169423;
Pathway : 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 000
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0017581.
Homophila reports that CG17342 is a close match (9e-11) to human gene MAPK10;PRKM10;JNK3 (NP_620447), a gene associated with Epileptic encephalopathy, Lennox-Gastaut type, 606369 (3).
BioGrid reports that CG17342 interacts with CG7434 CG17360 CG17489 CG17667 CG2709 CG3492 CG4466 CG7386 CG8247 CG9277 CG9375 .
TRiP has 2 RNAi stocks for FBgn0017581 available for purchase.
VDRC has 4 RNAi stocks for FBgn0017581 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1468 394 of 4 1.30Up
Head1919 914 of 4 1.70Up
Eye4362 2634 of 4 3.87Up
Thoracicoabdominal ganglion1897 524 of 4 1.70Up
Salivary gland4243 1374 of 4 3.76Up
Crop2193 464 of 4 1.90Up
Midgut890 354 of 4 0.80Down
Tubule991 644 of 4 0.90Down
Hindgut1600 104 of 4 1.40Up
Heart2228 2044 of 4 1.98Up
Fat body1336 1544 of 4 1.18None
Ovary814 144 of 4 0.70Down
Testis385 144 of 4 0.30Down
Male accessory glands1992 674 of 4 1.80Up
Virgin spermatheca1841 534 of 4 1.63Up
Mated spermatheca1277 894 of 4 1.13None
Adult carcass2251 1164 of 4 2.00Up
Larval CNS924 844 of 4 0.82Down
Larval Salivary gland906 1084 of 4 0.80None
Larval midgut1107 414 of 4 0.98None
Larval tubule990 224 of 4 0.90Down
Larval hindgut1247 614 of 4 1.11None
Larval fat body784 264 of 4 0.70Down
Larval trachea1550 1434 of 4 1.37Up
Larval carcass830 654 of 4 0.74Down
S2 cells (growing)1520 454 of 4 1.35Up
Whole fly1127 434 of 4

Looking for FBgn0017581. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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