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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0019624 through 18771 annotations produced 1 hits



cytochrome c oxidase subunit Va (CoVa):

Annotation Number : CG14724
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019624
Gbrowse : chr3R:7645080-7646030 (+) // 100.0 //
Probeset : 1639962_a_at
Accessions : protein= NP_477217; /// NP_731641;, nucleotide= NM_057869; /// NM_169436;
Pathway : cytochrome c to oxygen // inferred from sequence or structural similarity /// 0045787 // positive regulation of cell cy
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // non-trace
FlyMine data for FBgn0019624.
BDGP gene expression has embryonic in situ data for CoVa: 4 pix of staining in 1 body parts.
BioGrid reports that CG14724 interacts with CG3460 CG9313 CG17163 CG2998 CG3018 CG4027 CG4087 CG6141 CG7010 .
TRiP has 1 RNAi stocks for FBgn0019624 available for purchase.
VDRC has 2 RNAi stocks for FBgn0019624 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2328 754 of 4 1.00None
Head2926 814 of 4 1.20Up
Eye3709 964 of 4 1.52Up
Thoracicoabdominal ganglion3108 1094 of 4 1.30Up
Salivary gland2508 994 of 4 1.03None
Crop2450 1264 of 4 1.00None
Midgut2767 664 of 4 1.10Up
Tubule2719 724 of 4 1.10Up
Hindgut3607 994 of 4 1.50Up
Heart3825 2174 of 4 1.57Up
Fat body3085 2874 of 4 1.26Up
Ovary1142 244 of 4 0.50Down
Testis963 114 of 4 0.40Down
Male accessory glands1156 364 of 4 0.50Down
Virgin spermatheca2954 1864 of 4 1.21None
Mated spermatheca2782 474 of 4 1.14Up
Adult carcass4894 2814 of 4 2.00Up
Larval CNS1388 614 of 4 0.57Down
Larval Salivary gland2077 654 of 4 0.85Down
Larval midgut2650 564 of 4 1.08None
Larval tubule2155 2104 of 4 0.90None
Larval hindgut2960 504 of 4 1.21Up
Larval fat body953 414 of 4 0.40Down
Larval trachea1613 844 of 4 0.66Down
Larval carcass2857 2324 of 4 1.17None
S2 cells (growing)1174 194 of 4 0.48Down
Whole fly2443 624 of 4

Looking for FBgn0019624. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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