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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0019643 through 18771 annotations produced 1 hits



Arylalkylamine N-acetyltransferase-1 (Dat):

Annotation Number : CG3318
Flybase ID : FBgn0019643
Gbrowse : chr2R:20027107-20045285 (+) // 100.0 //
Probeset : 1637353_at
Accessions : protein= NP_523839; /// NP_995934;, nucleotide= NM_079115; /// NM_206212;
Pathway : sleep // traceable author statement /// 0046334 // octopamine catabolic process // non-traceable author statement /// 0
FlyMine data for FBgn0019643.
BDGP gene expression has embryonic in situ data for Dat: 20 pix of staining in 6 body parts.
TRiP has 2 RNAi stocks for FBgn0019643 available for purchase.
VDRC has 3 RNAi stocks for FBgn0019643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain765 64 of 4 2.70Up
Head707 304 of 4 2.50Up
Eye177 174 of 4 0.63Down
Thoracicoabdominal ganglion767 184 of 4 2.70Up
Salivary gland369 84 of 4 1.32Up
Crop137 84 of 4 0.50Down
Midgut2346 254 of 4 8.40Up
Tubule220 364 of 4 0.80None
Hindgut200 24 of 4 0.70None
Heart89 54 of 4 0.32Down
Fat body33 34 of 4 0.12Down
Ovary22 24 of 4 0.10Down
Testis76 54 of 4 0.30Down
Male accessory glands246 184 of 4 0.90None
Virgin spermatheca67 84 of 4 0.24Down
Mated spermatheca94 134 of 4 0.34Down
Adult carcass625 204 of 4 2.20Up
Larval CNS121 54 of 4 0.44Down
Larval Salivary gland23 20 of 4 0.08Down
Larval midgut695 844 of 4 2.48Up
Larval tubule129 44 of 4 0.50Down
Larval hindgut99 114 of 4 0.36Down
Larval fat body60 64 of 4 0.20Down
Larval trachea52 144 of 4 0.19Down
Larval carcass108 334 of 4 0.39Down
S2 cells (growing)6 10 of 4 0.02Down
Whole fly280 284 of 4

Looking for FBgn0019643. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime