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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0019644 through 18771 annotations produced 1 hits



Fo-ATP synthase subunit b (ATPsyn-b):

Annotation Number : CG8189
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019644
Gbrowse : chr3L:9723076-9724324 (+) // 100.0 //
Probeset : 1628573_a_at
Accessions : protein= NP_524011; /// NP_729540;, nucleotide= NM_079287; /// NM_168365;
Pathway : engulfment // inferred from mutant phenotype /// 0015986 // ATP synthesis coupled proton transport // inferred from ele
Interpro : coupling factor F(o) // inferred from sequence or structural similarity /// 0000276 // mitochondrial proton-transportin
FlyMine data for FBgn0019644.
BioGrid reports that CG8189 interacts with CG8942 CG9331 CG9797 .
TRiP has 1 RNAi stocks for FBgn0019644 available for purchase.
VDRC has 3 RNAi stocks for FBgn0019644 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2210 364 of 4 1.00None
Head2610 1254 of 4 1.10None
Eye3603 664 of 4 1.57Up
Thoracicoabdominal ganglion2829 1024 of 4 1.20Up
Salivary gland6434 3314 of 4 2.80Up
Crop2032 944 of 4 0.90None
Midgut2514 384 of 4 1.10Up
Tubule3071 764 of 4 1.30Up
Hindgut3639 644 of 4 1.60Up
Heart3908 1884 of 4 1.70Up
Fat body3220 3554 of 4 1.40Up
Ovary1120 314 of 4 0.50Down
Testis1274 354 of 4 0.60Down
Male accessory glands2497 254 of 4 1.10Up
Virgin spermatheca3145 1394 of 4 1.37Up
Mated spermatheca3018 1264 of 4 1.32Up
Adult carcass4512 2334 of 4 2.00Up
Larval CNS1330 904 of 4 0.58Down
Larval Salivary gland2837 734 of 4 1.24Up
Larval midgut2864 1114 of 4 1.25Up
Larval tubule1766 1534 of 4 0.80Down
Larval hindgut3015 344 of 4 1.31Up
Larval fat body756 304 of 4 0.30Down
Larval trachea1989 234 of 4 0.87Down
Larval carcass2974 2254 of 4 1.30None
S2 cells (growing)1459 314 of 4 0.64Down
Whole fly2295 414 of 4

Looking for FBgn0019644. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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