Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0019650 through 18771 annotations produced 3 hits



twin of eyeless (toy):

Annotation Number : CG11186
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019650
Gbrowse : chr4:1010353-1027011 (+) // 100.0 //
Probeset : 1633512_at
Accessions : protein= NP_524638;, nucleotide= NM_079899;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for FBgn0019650.
BDGP gene expression has embryonic in situ data for toy: 30 pix of staining in 12 body parts.
Homophila reports that CG11186 is a close match (5e-11) to human gene HESX1;RPX (NP_003856), a gene associated with Pituitary hormone deficiency, combined, HESX1-related, 182230 (3);Septooptic dysplasia, 182230 (3).
BioGrid reports that CG11186 interacts with CG11326 CG15737 CG2944 CG32183 CG32354 CG3647 CG8484 CG9902 CG1464 CG1464 CG1464 .
TRiP has 2 RNAi stocks for FBgn0019650 available for purchase.
VDRC has 2 RNAi stocks for FBgn0019650 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain855 ± 394 of 446.60Up
Head181 ± 74 of 4 9.90Up
Eye448 ± 214 of 424.46Up
Thoracicoabdominal ganglion199 ± 134 of 410.90Up
Salivary gland1 ± 00 of 4 0.08Down
Crop2 ± 10 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.12Down
Fat body3 ± 30 of 4 0.20Down
Ovary0 ± 00 of 4 0.00Down
Testis3 ± 00 of 4 0.20Down
Male accessory glands49 ± 64 of 4 2.70Up
Virgin spermatheca7 ± 21 of 4 0.39Down
Mated spermatheca10 ± 23 of 4 0.59Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS414 ± 644 of 422.57Up
Larval Salivary gland2 ± 10 of 4 0.11Down
Larval midgut3 ± 10 of 4 0.18Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.07Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea5 ± 81 of 4 0.30None
Larval carcass0 ± 00 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly18 ± 14 of 4



twin of eyeless (toy):

Annotation Number : CG11186
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019650
Gbrowse : chr4:1010353-1019500 (+) // 100.0 //
Probeset : 1623314_at
Accessions : protein= NP_524638;, nucleotide= NM_079899;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for FBgn0019650.
BDGP gene expression has embryonic in situ data for toy: 30 pix of staining in 12 body parts.
Homophila reports that CG11186 is a close match (5e-11) to human gene HESX1;RPX (NP_003856), a gene associated with Pituitary hormone deficiency, combined, HESX1-related, 182230 (3);Septooptic dysplasia, 182230 (3).
BioGrid reports that CG11186 interacts with CG11326 CG15737 CG2944 CG32183 CG32354 CG3647 CG8484 CG9902 CG1464 CG1464 CG1464 .
TRiP has 2 RNAi stocks for FBgn0019650 available for purchase.
VDRC has 2 RNAi stocks for FBgn0019650 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 2.60Up
Head1 ± 00 of 4 0.80None
Eye6 ± 11 of 4 3.46Up
Thoracicoabdominal ganglion3 ± 10 of 4 1.80None
Salivary gland5 ± 20 of 4 3.00None
Crop2 ± 11 of 4 1.50None
Midgut2 ± 00 of 4 1.00None
Tubule2 ± 00 of 4 1.00None
Hindgut2 ± 10 of 4 1.00None
Heart1 ± 10 of 4 1.00None
Fat body5 ± 22 of 4 2.82Up
Ovary1 ± 00 of 4 0.60None
Testis1 ± 00 of 4 0.60None
Male accessory glands1 ± 00 of 4 0.80None
Virgin spermatheca0 ± 00 of 4 0.36None
Mated spermatheca1 ± 00 of 4 0.71None
Adult carcass2 ± 10 of 4 1.40None
Larval CNS8 ± 24 of 4 4.36Up
Larval Salivary gland2 ± 10 of 4 1.38None
Larval midgut2 ± 10 of 4 1.00None
Larval tubule1 ± 00 of 4 1.00None
Larval hindgut1 ± 00 of 4 0.91None
Larval fat body4 ± 10 of 4 2.10None
Larval trachea1 ± 10 of 4 0.69None
Larval carcass0 ± 00 of 4 0.35None
S2 cells (growing)1 ± 00 of 4 0.58None
Whole fly2 ± 00 of 4



twin of eyeless (toy):

Annotation Number : CG11186
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019650
Gbrowse : chr4:1010353-1019500 (+) // 100.0 //
Probeset : 1633094_a_at
Accessions : protein= NP_524638;, nucleotide= NM_079899;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for FBgn0019650.
BDGP gene expression has embryonic in situ data for toy: 30 pix of staining in 12 body parts.
Homophila reports that CG11186 is a close match (5e-11) to human gene HESX1;RPX (NP_003856), a gene associated with Pituitary hormone deficiency, combined, HESX1-related, 182230 (3);Septooptic dysplasia, 182230 (3).
BioGrid reports that CG11186 interacts with CG11326 CG15737 CG2944 CG32183 CG32354 CG3647 CG8484 CG9902 CG1464 CG1464 CG1464 .
TRiP has 2 RNAi stocks for FBgn0019650 available for purchase.
VDRC has 2 RNAi stocks for FBgn0019650 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain228 ± 104 of 430.60Up
Head51 ± 84 of 4 6.90Up
Eye129 ± 94 of 417.31Up
Thoracicoabdominal ganglion45 ± 74 of 4 6.00Up
Salivary gland4 ± 20 of 4 0.54None
Crop2 ± 00 of 4 0.30Down
Midgut5 ± 11 of 4 0.70None
Tubule3 ± 00 of 4 0.40Down
Hindgut1 ± 00 of 4 0.20Down
Heart1 ± 00 of 4 0.14Down
Fat body4 ± 01 of 4 0.63None
Ovary2 ± 01 of 4 0.30Down
Testis2 ± 00 of 4 0.30Down
Male accessory glands11 ± 31 of 4 1.50None
Virgin spermatheca3 ± 11 of 4 0.51None
Mated spermatheca2 ± 10 of 4 0.30Down
Adult carcass3 ± 10 of 4 0.50None
Larval CNS115 ± 104 of 415.40Up
Larval Salivary gland4 ± 00 of 4 0.61None
Larval midgut5 ± 01 of 4 0.74None
Larval tubule1 ± 00 of 4 0.20Down
Larval hindgut2 ± 00 of 4 0.37Down
Larval fat body3 ± 10 of 4 0.40None
Larval trachea2 ± 20 of 4 0.38Down
Larval carcass4 ± 01 of 4 0.54None
S2 cells (growing)2 ± 11 of 4 0.28Down
Whole fly7 ± 13 of 4

Looking for FBgn0019650. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime