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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0019830 through 18771 annotations produced 1 hits



congested-like trachea (colt):

Annotation Number : CG3057
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019830
Gbrowse : chr2L:2768617-2770066 (-) // 100.0 //
Probeset : 1628991_at
Accessions : protein= NP_477221; /// NP_995616; /// NP_995617; /// NP_995618;, nucleotide= NM_057873; /// NM_205894; /// NM_205895; /// NM_205896;
Pathway : engulfment // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from elect
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from s
FlyMine data for FBgn0019830.
Homophila reports that CG3057 is a close match (7e-13) to human gene UCP3 (NP_073714), a gene associated with {Obesity, severe, and type II diabetes}, 601665 (3).
VDRC has 3 RNAi stocks for FBgn0019830 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 74 of 4 0.40Down
Head818 564 of 4 1.40Up
Eye603 434 of 4 1.05None
Thoracicoabdominal ganglion257 84 of 4 0.40Down
Salivary gland710 234 of 4 1.23Up
Crop797 214 of 4 1.40Up
Midgut1070 334 of 4 1.90Up
Tubule889 264 of 4 1.50Up
Hindgut551 64 of 4 1.00None
Heart1328 964 of 4 2.30Up
Fat body2103 2124 of 4 3.65Up
Ovary330 64 of 4 0.60Down
Testis371 184 of 4 0.60Down
Male accessory glands748 434 of 4 1.30Up
Virgin spermatheca2642 694 of 4 4.58Up
Mated spermatheca2928 1734 of 4 5.08Up
Adult carcass1314 434 of 4 2.30Up
Larval CNS201 144 of 4 0.35Down
Larval Salivary gland774 334 of 4 1.34Up
Larval midgut663 424 of 4 1.15None
Larval tubule214 44 of 4 0.40Down
Larval hindgut323 234 of 4 0.56Down
Larval fat body549 404 of 4 1.00None
Larval trachea267 274 of 4 0.46Down
Larval carcass577 724 of 4 1.00None
S2 cells (growing)361 54 of 4 0.63Down
Whole fly576 294 of 4

Looking for FBgn0019830. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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