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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0019928 through 18771 annotations produced 1 hits



Serine Protease 3 (Ser8):

Annotation Number : CG4812
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019928
Gbrowse : chr2R:9321716-9322499 (+) // 100.0 //
Probeset : 1626222_at
Accessions : protein= NP_610874;, nucleotide= NM_137030;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0019928.
Homophila reports that CG4812 is a close match (5e-11) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_115781), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
TRiP has 2 RNAi stocks for FBgn0019928 available for purchase.
VDRC has 1 RNAi stocks for FBgn0019928 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 11 of 4 0.00Down
Head4 20 of 4 0.00Down
Eye4 11 of 4 0.03Down
Thoracicoabdominal ganglion4 00 of 4 0.00Down
Salivary gland21 33 of 4 0.13Down
Crop6 01 of 4 0.00Down
Midgut2498 404 of 415.40Up
Tubule5 00 of 4 0.00Down
Hindgut7 12 of 4 0.00Down
Heart2 00 of 4 0.02Down
Fat body8 10 of 4 0.05Down
Ovary1 00 of 4 0.00Down
Testis9 02 of 4 0.10Down
Male accessory glands7 10 of 4 0.00Down
Virgin spermatheca19 24 of 4 0.12Down
Mated spermatheca18 14 of 4 0.11Down
Adult carcass5 20 of 4 0.00Down
Larval CNS3 21 of 4 0.02Down
Larval Salivary gland8 20 of 4 0.05Down
Larval midgut29 33 of 4 0.18Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut6 02 of 4 0.04Down
Larval fat body16 40 of 4 0.10Down
Larval trachea3 10 of 4 0.02Down
Larval carcass5 00 of 4 0.03Down
S2 cells (growing)4 01 of 4 0.03Down
Whole fly162 174 of 4

Looking for FBgn0019928. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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