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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0019932 through 18771 annotations produced 2 hits



S-adenosylmethionine decarboxylase (SamDC):

Annotation Number : CG5029
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019932
Gbrowse : chr2L:10339459-10340736 (+) // 100.0 //
Probeset : 1635130_a_at
Accessions : protein= NP_477223; /// NP_723567;, nucleotide= NM_057875; /// NM_164916;
Interpro : 0004014 // adenosylmethionine decarboxylase activity // inferred from electronic annotation /// 0004014 // adenosylmethi
FlyMine data for FBgn0019932.
BioGrid reports that CG5029 interacts with CG8247 .
VDRC has 5 RNAi stocks for FBgn0019932 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain133 ± 94 of 4 0.90None
Head208 ± 204 of 4 1.50Up
Eye164 ± 84 of 4 1.16None
Thoracicoabdominal ganglion126 ± 64 of 4 0.90None
Salivary gland178 ± 104 of 4 1.26None
Crop141 ± 124 of 4 1.00None
Midgut97 ± 74 of 4 0.70None
Tubule17 ± 20 of 4 0.10Down
Hindgut126 ± 74 of 4 0.90None
Heart484 ± 294 of 4 3.42Up
Fat body714 ± 914 of 4 5.04Up
Ovary149 ± 34 of 4 1.10None
Testis123 ± 14 of 4 0.90None
Male accessory glands109 ± 94 of 4 0.80None
Virgin spermatheca162 ± 144 of 4 1.14None
Mated spermatheca166 ± 74 of 4 1.17None
Adult carcass238 ± 194 of 4 1.70Up
Larval CNS85 ± 124 of 4 0.60Down
Larval Salivary gland159 ± 34 of 4 1.13None
Larval midgut69 ± 54 of 4 0.49Down
Larval tubule83 ± 64 of 4 0.60Down
Larval hindgut114 ± 64 of 4 0.81None
Larval fat body362 ± 304 of 4 2.60Up
Larval trachea228 ± 274 of 4 1.61Up
Larval carcass152 ± 194 of 4 1.07None
S2 cells (growing)236 ± 14 of 4 1.67Up
Whole fly141 ± 154 of 4



S-adenosylmethionine decarboxylase (SamDC):

Annotation Number : CG5029
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019932
Gbrowse : chr2L:10339459-10341505 (+) // 100.0 //
Probeset : 1633958_at
Accessions : protein= NP_477223; /// NP_723567;, nucleotide= NM_057875; /// NM_164916;
Interpro : 0004014 // adenosylmethionine decarboxylase activity // inferred from electronic annotation /// 0004014 // adenosylmethi
FlyMine data for FBgn0019932.
BioGrid reports that CG5029 interacts with CG8247 .
VDRC has 5 RNAi stocks for FBgn0019932 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain257 ± 44 of 4 1.00None
Head426 ± 44 of 4 1.60Up
Eye297 ± 224 of 4 1.12None
Thoracicoabdominal ganglion281 ± 74 of 4 1.10None
Salivary gland307 ± 94 of 4 1.16Up
Crop206 ± 24 of 4 0.80Down
Midgut135 ± 54 of 4 0.50Down
Tubule158 ± 114 of 4 0.60Down
Hindgut193 ± 34 of 4 0.70Down
Heart740 ± 364 of 4 2.78Up
Fat body1188 ± 424 of 4 4.47Up
Ovary271 ± 54 of 4 1.00None
Testis186 ± 64 of 4 0.70Down
Male accessory glands285 ± 224 of 4 1.10None
Virgin spermatheca963 ± 374 of 4 3.62Up
Mated spermatheca1052 ± 204 of 4 3.96Up
Adult carcass452 ± 184 of 4 1.70Up
Larval CNS181 ± 54 of 4 0.68Down
Larval Salivary gland248 ± 124 of 4 0.93None
Larval midgut133 ± 64 of 4 0.50Down
Larval tubule148 ± 54 of 4 0.60Down
Larval hindgut192 ± 94 of 4 0.73Down
Larval fat body633 ± 734 of 4 2.40Up
Larval trachea403 ± 364 of 4 1.52Up
Larval carcass252 ± 294 of 4 0.95None
S2 cells (growing)203 ± 34 of 4 0.76Down
Whole fly265 ± 44 of 4

Looking for FBgn0019932. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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