FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0019936 through 18771 annotations produced 1 hits

Down syndrome cell adhesion molecule /// ribosomal protein S20 (Dscam /// RpS20):

Annotation Number : CG15693
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019936
Gbrowse : chr3R:16647900-16649078 (+) // 100.0 //
Probeset : 1641614_at
Accessions : protein= NP_524421;, nucleotide= NM_079697;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0019936.
BDGP gene expression has embryonic in situ data for RpS20: 4 pix of staining in 1 body parts.
BioGrid reports that CG15693 interacts with CG9793 CG16889 CG17107 CG17230 CG30011 CG30021 CG3003 CG30115 CG4795 CG5576 CG5838 CG6950 CG7928 CG7967 CG8120 CG8198 CG8357 CG8364 .
VDRC has 2 RNAi stocks for FBgn0019936 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2592 ± 21	4 of 4	0.60	Down
Head	4966 ± 203	4 of 4	1.10	None
Eye	6214 ± 241	4 of 4	1.39	Up
Thoracicoabdominal ganglion	3550 ± 102	4 of 4	0.80	Down
Salivary gland	11524 ± 264	4 of 4	2.59	Up
Crop	6328 ± 352	4 of 4	1.40	Up
Midgut	6102 ± 166	4 of 4	1.40	Up
Tubule	5922 ± 99	4 of 4	1.30	Up
Hindgut	4946 ± 142	4 of 4	1.10	None
Heart	7352 ± 532	4 of 4	1.65	Up
Fat body	6245 ± 763	4 of 4	1.40	Up
Ovary	3848 ± 93	4 of 4	0.90	None
Testis	1168 ± 10	4 of 4	0.30	Down
Male accessory glands	8480 ± 292	4 of 4	1.90	Up
Virgin spermatheca	5104 ± 320	4 of 4	1.15	None
Mated spermatheca	5576 ± 156	4 of 4	1.25	Up
Adult carcass	6171 ± 291	4 of 4	1.40	Up
Larval CNS	3000 ± 168	4 of 4	0.67	Down
Larval Salivary gland	8385 ± 325	4 of 4	1.88	Up
Larval midgut	5460 ± 157	4 of 4	1.23	Up
Larval tubule	4921 ± 102	4 of 4	1.10	None
Larval hindgut	4716 ± 42	4 of 4	1.06	None
Larval fat body	8185 ± 881	4 of 4	1.80	Up
Larval trachea	6692 ± 221	4 of 4	1.50	Up
Larval carcass	5357 ± 466	4 of 4	1.20	None
S2 cells (growing)	4681 ± 66	4 of 4	1.05	None
Whole fly	4456 ± 284	4 of 4

Looking for FBgn0019936. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720