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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0019940 through 18771 annotations produced 1 hits



rhodopsin (Rh6):

Annotation Number : CG5192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019940
Gbrowse : chr3R:11308879-11310421 (+) // 100.0 //
Probeset : 1640642_at
Accessions : protein= NP_524368;, nucleotide= NM_079644;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0019940.
BDGP gene expression has embryonic in situ data for Rh6: 2 pix of staining in 1 body parts.
Homophila reports that CG5192 is a close match (4e-11) to human gene DRD1B;DRD1L2;DRD5 (NP_000789), a gene associated with Dystonia, primary cervical (3);{Attention deficit-hyperactivity disorder, susceptibility to}, 143465 (3);{Blepharospasm, primary benign}, 606798 (3).
BioGrid reports that CG5192 interacts with CG4550 .
VDRC has 2 RNAi stocks for FBgn0019940 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 20 of 4 0.20None
Head1230 1704 of 415.40Up
Eye973 124 of 412.16Up
Thoracicoabdominal ganglion14 30 of 4 0.20None
Salivary gland22 100 of 4 0.27None
Crop13 10 of 4 0.20None
Midgut29 20 of 4 0.40None
Tubule5 10 of 4 0.10Down
Hindgut11 20 of 4 0.10Down
Heart9 20 of 4 0.12Down
Fat body22 80 of 4 0.28None
Ovary1 00 of 4 0.00Down
Testis9 10 of 4 0.10Down
Male accessory glands19 30 of 4 0.20None
Virgin spermatheca18 10 of 4 0.24None
Mated spermatheca20 30 of 4 0.26None
Adult carcass24 20 of 4 0.30None
Larval CNS17 30 of 4 0.22None
Larval Salivary gland17 30 of 4 0.21None
Larval midgut21 10 of 4 0.26None
Larval tubule11 10 of 4 0.10Down
Larval hindgut9 10 of 4 0.12Down
Larval fat body24 20 of 4 0.30None
Larval trachea16 211 of 4 0.20None
Larval carcass25 00 of 4 0.32None
S2 cells (growing)12 20 of 4 0.15None
Whole fly80 212 of 4

Looking for FBgn0019940. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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