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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0019947 through 18771 annotations produced 1 hits



chr3L:20425567-20428256 (+) // 100.0 // (Dpresenilin):

Annotation Number : CG18803
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624165_a_at
Accessions : protein= , nucleotide= NP_001137988; /// NP_524184; /// NP_730535;
Pathway : 0006509 // membrane protein ectodomain proteolysis // traceable author statement /// 0007010 // cytoskeleton organizatio
Interpro : 0005737 // cytoplasm // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from direct as
FlyMine data for full length.
Homophila reports that CG18803 is a close match (6e-84) to human gene AD4;PSEN2;STM2 (NP_036618), a gene associated with Alzheimer disease-4, 606889 (3);Cardiomyopathy, dilated, 1V (3).
BioGrid reports that CG18803 interacts with CG30480 CG11579 CG3619 CG3619 CG5460 CG8118 CG12284 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG4319 CG3937 CG13929 CG13929 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain199 ± 44 of 4 1.40Up
Head128 ± 134 of 4 0.90None
Eye212 ± 104 of 4 1.52Up
Thoracicoabdominal ganglion207 ± 44 of 4 1.50Up
Salivary gland209 ± 74 of 4 1.50Up
Crop158 ± 34 of 4 1.10Up
Midgut229 ± 114 of 4 1.60Up
Tubule200 ± 94 of 4 1.40Up
Hindgut159 ± 34 of 4 1.10Up
Heart148 ± 84 of 4 1.06None
Fat body128 ± 124 of 4 0.91None
Ovary209 ± 34 of 4 1.50Up
Testis190 ± 104 of 4 1.40Up
Male accessory glands327 ± 74 of 4 2.30Up
Virgin spermatheca177 ± 74 of 4 1.27Up
Mated spermatheca166 ± 64 of 4 1.19Up
Adult carcass134 ± 104 of 4 1.00None
Larval CNS301 ± 204 of 4 2.16Up
Larval Salivary gland436 ± 264 of 4 3.12Up
Larval midgut524 ± 114 of 4 3.75Up
Larval tubule706 ± 174 of 4 5.00Up
Larval hindgut374 ± 184 of 4 2.68Up
Larval fat body325 ± 244 of 4 2.30Up
Larval trachea454 ± 274 of 4 3.25Up
Larval carcass268 ± 154 of 4 1.92Up
S2 cells (growing)685 ± 104 of 4 4.90Up
Whole fly139 ± 54 of 4

Looking for FBgn0019947. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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