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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0019960 through 18771 annotations produced 1 hits



Motor protein (CG6455):

Annotation Number : CG6455
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019960
Gbrowse : chr3R:17845226-17849203 (-) // 100.0 //
Probeset : 1639242_a_at
Accessions : protein= NP_524444; /// NP_732688;, nucleotide= NM_079720; /// NM_169988;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
FlyMine data for FBgn0019960.
BDGP gene expression has embryonic in situ data for Motor-protein: 11 pix of staining in 13 body parts.
BioGrid reports that CG6455 interacts with CG8884 CG9117 .
VDRC has 6 RNAi stocks for FBgn0019960 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain461 ± 154 of 4 1.00None
Head517 ± 104 of 4 1.10Up
Eye650 ± 214 of 4 1.42Up
Thoracicoabdominal ganglion568 ± 104 of 4 1.20Up
Salivary gland537 ± 214 of 4 1.17Up
Crop580 ± 74 of 4 1.30Up
Midgut388 ± 94 of 4 0.80Down
Tubule760 ± 104 of 4 1.70Up
Hindgut778 ± 104 of 4 1.70Up
Heart635 ± 174 of 4 1.38Up
Fat body701 ± 374 of 4 1.53Up
Ovary307 ± 54 of 4 0.70Down
Testis696 ± 84 of 4 1.50Up
Male accessory glands227 ± 114 of 4 0.50Down
Virgin spermatheca746 ± 224 of 4 1.63Up
Mated spermatheca682 ± 324 of 4 1.49Up
Adult carcass841 ± 74 of 4 1.80Up
Larval CNS350 ± 264 of 4 0.76Down
Larval Salivary gland440 ± 84 of 4 0.96None
Larval midgut548 ± 364 of 4 1.19None
Larval tubule285 ± 94 of 4 0.60Down
Larval hindgut780 ± 534 of 4 1.70Up
Larval fat body223 ± 244 of 4 0.50Down
Larval trachea393 ± 154 of 4 0.86Down
Larval carcass766 ± 564 of 4 1.67Up
S2 cells (growing)334 ± 54 of 4 0.73Down
Whole fly459 ± 144 of 4

Looking for FBgn0019960. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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