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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020224 through 18771 annotations produced 2 hits



chr3L:8418044-8424319 (+) // 99.87 // (Cbl):

Annotation Number : CG7037
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635580_at
Accessions : protein= , nucleotide= NP_648224; /// NP_729382;
Pathway : "0001754 // eye photoreceptor cell differentiation // inferred from direct assay /// 0006508 // proteolysis // traceable
Interpro : ovarian follicular epithelium // inferred from mutant phenotype /// 0009950 // dorsal/ventral axis specification // inf
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain413 44 of 410.40Up
Head112 74 of 4 2.80Up
Eye100 104 of 4 2.54Up
Thoracicoabdominal ganglion383 144 of 4 9.60Up
Salivary gland20 33 of 4 0.51Down
Crop75 24 of 4 1.90Up
Midgut18 14 of 4 0.50Down
Tubule13 13 of 4 0.30Down
Hindgut21 14 of 4 0.50None
Heart33 24 of 4 0.84None
Fat body39 164 of 4 0.98None
Ovary31 24 of 4 0.80None
Testis16 14 of 4 0.40Down
Male accessory glands22 14 of 4 0.60None
Virgin spermatheca27 34 of 4 0.68None
Mated spermatheca36 94 of 4 0.91None
Adult carcass88 54 of 4 2.20Up
Larval CNS467 374 of 411.76Up
Larval Salivary gland26 24 of 4 0.67None
Larval midgut11 22 of 4 0.29Down
Larval tubule17 14 of 4 0.40Down
Larval hindgut21 34 of 4 0.53Down
Larval fat body17 33 of 4 0.40Down
Larval trachea5 23 of 4 0.14Down
Larval carcass100 144 of 4 2.52Up
S2 cells (growing)5 00 of 4 0.15Down
Whole fly39 54 of 4



chr3L:8418044-8421497 (+) // 100.0 // (Cbl):

Annotation Number : CG7037
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626708_at
Accessions : protein= , nucleotide= NP_648224; /// NP_729382;
Pathway : "0001754 // eye photoreceptor cell differentiation // inferred from direct assay /// 0006508 // proteolysis // traceable
Interpro : ovarian follicular epithelium // inferred from mutant phenotype /// 0009950 // dorsal/ventral axis specification // inf
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 44 of 4 0.40Down
Head62 84 of 4 0.30Down
Eye160 114 of 4 0.77None
Thoracicoabdominal ganglion79 84 of 4 0.40Down
Salivary gland152 324 of 4 0.73None
Crop170 64 of 4 0.80None
Midgut288 114 of 4 1.40Up
Tubule177 64 of 4 0.90Down
Hindgut163 114 of 4 0.80None
Heart190 54 of 4 0.91None
Fat body115 154 of 4 0.56Down
Ovary564 104 of 4 2.70Up
Testis24 44 of 4 0.10Down
Male accessory glands140 44 of 4 0.70Down
Virgin spermatheca225 44 of 4 1.08None
Mated spermatheca221 234 of 4 1.06None
Adult carcass96 174 of 4 0.50Down
Larval CNS125 134 of 4 0.60Down
Larval Salivary gland234 174 of 4 1.12None
Larval midgut139 114 of 4 0.67Down
Larval tubule183 74 of 4 0.90None
Larval hindgut132 104 of 4 0.64Down
Larval fat body108 134 of 4 0.50Down
Larval trachea336 394 of 4 1.62Up
Larval carcass126 234 of 4 0.61Down
S2 cells (growing)334 104 of 4 1.61Up
Whole fly208 164 of 4

Looking for FBgn0020224. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime