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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020235 through 18771 annotations produced 2 hits



F1ATP synthase (ATPsyn-gamma):

Annotation Number : CG7610
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020235
Gbrowse : chr3R:25573575-25574858 (-) // 100.0 //
Probeset : 1627018_s_at
Accessions : protein= NP_524550; /// NP_733304; /// NP_733305;, nucleotide= NM_079826; /// NM_170425; /// NM_170426;
Pathway : engulfment // inferred from mutant phenotype /// 0015986 // ATP synthesis coupled proton transport // inferred from ele
Interpro : catalytic core F(1) // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from el
FlyMine data for FBgn0020235.
BDGP gene expression has embryonic in situ data for ATPsyn-gamma: 14 pix of staining in 12 body parts.
BioGrid reports that CG7610 interacts with CG9424 CG9573 .
TRiP has 1 RNAi stocks for FBgn0020235 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020235 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1277 ± 184 of 4 0.90Down
Head1569 ± 534 of 4 1.10None
Eye1964 ± 474 of 4 1.39Up
Thoracicoabdominal ganglion1686 ± 394 of 4 1.20Up
Salivary gland2426 ± 974 of 4 1.72Up
Crop1592 ± 624 of 4 1.10None
Midgut1507 ± 544 of 4 1.10None
Tubule1816 ± 464 of 4 1.30Up
Hindgut2447 ± 594 of 4 1.70Up
Heart2593 ± 1134 of 4 1.84Up
Fat body2238 ± 2734 of 4 1.59Up
Ovary849 ± 134 of 4 0.60Down
Testis295 ± 94 of 4 0.20Down
Male accessory glands1132 ± 214 of 4 0.80Down
Virgin spermatheca1664 ± 754 of 4 1.18Up
Mated spermatheca1460 ± 424 of 4 1.04None
Adult carcass3256 ± 1544 of 4 2.30Up
Larval CNS1107 ± 834 of 4 0.79Down
Larval Salivary gland1771 ± 824 of 4 1.26Up
Larval midgut1929 ± 574 of 4 1.37Up
Larval tubule1304 ± 1574 of 4 0.90None
Larval hindgut2572 ± 484 of 4 1.82Up
Larval fat body552 ± 444 of 4 0.40Down
Larval trachea1698 ± 544 of 4 1.20Up
Larval carcass2356 ± 2154 of 4 1.67Up
S2 cells (growing)2427 ± 484 of 4 1.72Up
Whole fly1411 ± 184 of 4



F1ATP synthase (ATPsyn-gamma):

Annotation Number : CG7610
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020235
Gbrowse : chr3R:25573423-25574564 (-) // 100.0 //
Probeset : 1632838_at
Accessions : protein= NP_524550; /// NP_733304; /// NP_733305;, nucleotide= NM_079826; /// NM_170425; /// NM_170426;
Pathway : engulfment // inferred from mutant phenotype /// 0015986 // ATP synthesis coupled proton transport // inferred from ele
Interpro : catalytic core F(1) // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from el
FlyMine data for FBgn0020235.
BDGP gene expression has embryonic in situ data for ATPsyn-gamma: 14 pix of staining in 12 body parts.
BioGrid reports that CG7610 interacts with CG9424 CG9573 .
TRiP has 1 RNAi stocks for FBgn0020235 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020235 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1445 ± 474 of 4 0.90Down
Head1794 ± 864 of 4 1.10None
Eye1910 ± 344 of 4 1.17Up
Thoracicoabdominal ganglion1898 ± 594 of 4 1.20Up
Salivary gland2834 ± 824 of 4 1.74Up
Crop1924 ± 524 of 4 1.20Up
Midgut1940 ± 454 of 4 1.20Up
Tubule2341 ± 444 of 4 1.40Up
Hindgut2610 ± 704 of 4 1.60Up
Heart2582 ± 1014 of 4 1.59Up
Fat body3816 ± 2394 of 4 2.34Up
Ovary1227 ± 94 of 4 0.80Down
Testis423 ± 94 of 4 0.30Down
Male accessory glands1523 ± 454 of 4 0.90None
Virgin spermatheca3836 ± 1474 of 4 2.36Up
Mated spermatheca3267 ± 1514 of 4 2.01Up
Adult carcass3066 ± 2204 of 4 1.90Up
Larval CNS1616 ± 1294 of 4 0.99None
Larval Salivary gland2542 ± 1074 of 4 1.56Up
Larval midgut3532 ± 784 of 4 2.17Up
Larval tubule1635 ± 1214 of 4 1.00None
Larval hindgut3886 ± 1514 of 4 2.39Up
Larval fat body980 ± 924 of 4 0.60Down
Larval trachea1551 ± 734 of 4 0.95None
Larval carcass2816 ± 3194 of 4 1.73Up
S2 cells (growing)2315 ± 234 of 4 1.42Up
Whole fly1628 ± 544 of 4

Looking for FBgn0020235. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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