FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0020255 through 18771 annotations produced 2 hits

ran (ran):

Annotation Number : CG1404
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020255
Gbrowse : chrX:11038894-11042622 (-) // 100.0 //
Probeset : 1637015_s_at
Accessions : protein= NP_651969; /// NP_727499;, nucleotide= NM_143712; /// NM_167272;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 000
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0020255.
BDGP gene expression has embryonic in situ data for ran: 31 pix of staining in 18 body parts.
Homophila reports that CG1404 is a close match (5e-11) to human gene RRAS2;TC21 (NP_036382), a gene associated with Ovarian carcinoma (3).
BioGrid reports that CG1404 interacts with CG7070 CG1478 CG9999 .
TRiP has 1 RNAi stocks for FBgn0020255 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020255 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	619 ± 25	4 of 4	0.60	Down
Head	563 ± 33	4 of 4	0.50	Down
Eye	567 ± 20	4 of 4	0.53	Down
Thoracicoabdominal ganglion	804 ± 42	4 of 4	0.80	Down
Salivary gland	579 ± 25	4 of 4	0.54	Down
Crop	850 ± 46	4 of 4	0.80	Down
Midgut	592 ± 13	4 of 4	0.60	Down
Tubule	581 ± 74	4 of 4	0.50	Down
Hindgut	515 ± 20	4 of 4	0.50	Down
Heart	693 ± 57	4 of 4	0.65	Down
Fat body	982 ± 116	4 of 4	0.92	None
Ovary	1639 ± 62	4 of 4	1.50	Up
Testis	418 ± 12	4 of 4	0.40	Down
Male accessory glands	716 ± 35	4 of 4	0.70	Down
Virgin spermatheca	984 ± 58	4 of 4	0.92	None
Mated spermatheca	1313 ± 32	4 of 4	1.23	Up
Adult carcass	552 ± 38	4 of 4	0.50	Down
Larval CNS	1739 ± 135	4 of 4	1.63	Up
Larval Salivary gland	1686 ± 107	4 of 4	1.58	Up
Larval midgut	806 ± 35	4 of 4	0.76	Down
Larval tubule	566 ± 15	4 of 4	0.50	Down
Larval hindgut	1183 ± 56	4 of 4	1.11	None
Larval fat body	884 ± 54	4 of 4	0.80	Down
Larval trachea	1086 ± 116	4 of 4	1.02	None
Larval carcass	1411 ± 145	4 of 4	1.32	None
S2 cells (growing)	1181 ± 44	4 of 4	1.11	None
Whole fly	1068 ± 29	4 of 4

Fermitin 1 /// ran (Fit1 /// ran):

Annotation Number : CG14991
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035498
Gbrowse : chr3L:4103566-4107121 (+) // 100.0 //
Probeset : 1637149_s_at
Accessions : protein= NP_647858; /// NP_728936;, nucleotide= NM_139601; /// NM_168060;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /// 000
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0035498.
BDGP gene expression has embryonic in situ data for CG14991: 4 pix of staining in 1 body parts.
Homophila reports that CG14991 is a close match (7e-142) to human gene C20orf42;KIND1;URP1 (NP_060141), a gene associated with Kindler syndrome, 173650 (3).
BioGrid reports that CG14991 interacts with CG18854 .
TRiP has 1 RNAi stocks for FBgn0035498 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035498 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	342 ± 6	4 of 4	0.90	Down
Head	410 ± 19	4 of 4	1.10	None
Eye	362 ± 3	4 of 4	0.93	None
Thoracicoabdominal ganglion	399 ± 10	4 of 4	1.00	None
Salivary gland	1447 ± 35	4 of 4	3.71	Up
Crop	1337 ± 32	4 of 4	3.40	Up
Midgut	712 ± 3	4 of 4	1.80	Up
Tubule	911 ± 153	4 of 4	2.30	Up
Hindgut	832 ± 10	4 of 4	2.10	Up
Heart	1799 ± 63	4 of 4	4.62	Up
Fat body	694 ± 59	4 of 4	1.78	Up
Ovary	520 ± 8	4 of 4	1.30	Up
Testis	240 ± 5	4 of 4	0.60	Down
Male accessory glands	1061 ± 21	4 of 4	2.70	Up
Virgin spermatheca	758 ± 35	4 of 4	1.95	Up
Mated spermatheca	882 ± 41	4 of 4	2.27	Up
Adult carcass	717 ± 16	4 of 4	1.80	Up
Larval CNS	350 ± 21	4 of 4	0.90	None
Larval Salivary gland	975 ± 30	4 of 4	2.50	Up
Larval midgut	724 ± 32	4 of 4	1.86	Up
Larval tubule	581 ± 19	4 of 4	1.50	Up
Larval hindgut	655 ± 27	4 of 4	1.68	Up
Larval fat body	1345 ± 136	4 of 4	3.50	Up
Larval trachea	614 ± 26	4 of 4	1.58	Up
Larval carcass	818 ± 42	4 of 4	2.10	Up
S2 cells (growing)	315 ± 4	4 of 4	0.81	Down
Whole fly	389 ± 13	4 of 4

Looking for FBgn0020255. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720