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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020257 through 18771 annotations produced 1 hits



partner of paired (ppa):

Annotation Number : CG9952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020257
Gbrowse : chr2R:18573029-18576478 (-) // 100.0 //
Probeset : 1639677_at
Accessions : protein= NP_523812;, nucleotide= NM_079088;
Pathway : 0000152 // nuclear ubiquitin ligase complex // inferred from sequence or structural similarity /// 0019005 // SCF ubiqui
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0020257.
BDGP gene expression has embryonic in situ data for ppa: 18 pix of staining in 22 body parts.
TRiP has 1 RNAi stocks for FBgn0020257 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020257 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 ± 34 of 4 3.70Up
Head54 ± 44 of 4 1.60Up
Eye116 ± 64 of 4 3.48Up
Thoracicoabdominal ganglion72 ± 64 of 4 2.20Up
Salivary gland60 ± 44 of 4 1.79Up
Crop95 ± 54 of 4 2.90Up
Midgut113 ± 44 of 4 3.40Up
Tubule106 ± 74 of 4 3.20Up
Hindgut53 ± 24 of 4 1.60Up
Heart61 ± 74 of 4 1.85Up
Fat body51 ± 24 of 4 1.54Up
Ovary11 ± 04 of 4 0.30Down
Testis11 ± 14 of 4 0.30Down
Male accessory glands86 ± 64 of 4 2.60Up
Virgin spermatheca108 ± 04 of 4 3.24Up
Mated spermatheca177 ± 334 of 4 5.30Up
Adult carcass50 ± 84 of 4 1.50None
Larval CNS204 ± 104 of 4 6.10Up
Larval Salivary gland72 ± 54 of 4 2.16Up
Larval midgut92 ± 184 of 4 2.75Up
Larval tubule225 ± 64 of 4 6.70Up
Larval hindgut52 ± 04 of 4 1.57Up
Larval fat body40 ± 34 of 4 1.20None
Larval trachea285 ± 94 of 4 8.54Up
Larval carcass84 ± 114 of 4 2.53Up
S2 cells (growing)71 ± 24 of 4 2.15Up
Whole fly33 ± 24 of 4

Looking for FBgn0020257. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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