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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020261 through 18771 annotations produced 1 hits



Pacman (pcm):

Annotation Number : CG3291
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020261
Gbrowse : chrX:19379779-19385984 (-) // 100.0 //
Probeset : 1624778_at
Accessions : protein= NP_001162796; /// NP_523408;, nucleotide= NM_001169325; /// NM_078684;
Pathway : nonsense-mediated decay // inferred from mutant phenotype /// 0006139 // nucleobase
Interpro : nucleoside
FlyMine data for FBgn0020261.
TRiP has 2 RNAi stocks for FBgn0020261 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020261 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain186 124 of 4 1.10None
Head84 24 of 4 0.50Down
Eye65 14 of 4 0.38Down
Thoracicoabdominal ganglion117 74 of 4 0.70None
Salivary gland99 44 of 4 0.58Down
Crop79 34 of 4 0.50Down
Midgut84 44 of 4 0.50Down
Tubule99 44 of 4 0.60Down
Hindgut71 24 of 4 0.40Down
Heart62 64 of 4 0.36Down
Fat body111 84 of 4 0.65None
Ovary345 84 of 4 2.00Up
Testis214 114 of 4 1.20None
Male accessory glands102 34 of 4 0.60None
Virgin spermatheca87 84 of 4 0.51Down
Mated spermatheca104 44 of 4 0.61None
Adult carcass82 44 of 4 0.50Down
Larval CNS337 204 of 4 1.96Up
Larval Salivary gland195 134 of 4 1.14None
Larval midgut105 44 of 4 0.61None
Larval tubule118 94 of 4 0.70None
Larval hindgut137 54 of 4 0.80None
Larval fat body151 54 of 4 0.90None
Larval trachea155 84 of 4 0.91None
Larval carcass189 54 of 4 1.10None
S2 cells (growing)171 94 of 4 1.00None
Whole fly171 224 of 4

Looking for FBgn0020261. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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