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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020272 through 18771 annotations produced 1 hits



lethal(1)19Fg (mst):

Annotation Number : CG1424
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020272
Gbrowse : chrX:21260033-21261877 (+) // 100.0 //
Probeset : 1638175_at
Accessions : protein= NP_523435;, nucleotide= NM_078711;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from sequence or
FlyMine data for FBgn0020272.
TRiP has 1 RNAi stocks for FBgn0020272 available for purchase.
VDRC has 1 RNAi stocks for FBgn0020272 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 12 of 4 0.10Down
Head12 14 of 4 0.20Down
Eye10 12 of 4 0.14Down
Thoracicoabdominal ganglion15 24 of 4 0.20Down
Salivary gland13 61 of 4 0.18Down
Crop32 14 of 4 0.40Down
Midgut26 24 of 4 0.40Down
Tubule14 22 of 4 0.20Down
Hindgut22 14 of 4 0.30Down
Heart23 24 of 4 0.31Down
Fat body20 44 of 4 0.28Down
Ovary165 34 of 4 2.20Up
Testis11 11 of 4 0.10Down
Male accessory glands55 44 of 4 0.70None
Virgin spermatheca13 11 of 4 0.19Down
Mated spermatheca13 33 of 4 0.18Down
Adult carcass26 34 of 4 0.40Down
Larval CNS61 34 of 4 0.83None
Larval Salivary gland49 44 of 4 0.66Down
Larval midgut21 14 of 4 0.28Down
Larval tubule17 14 of 4 0.20Down
Larval hindgut30 14 of 4 0.41Down
Larval fat body17 32 of 4 0.20Down
Larval trachea68 144 of 4 0.91None
Larval carcass45 54 of 4 0.60Down
S2 cells (growing)184 24 of 4 2.46Up
Whole fly74 64 of 4

Looking for FBgn0020272. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime