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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020277 through 18771 annotations produced 1 hits



lush (lush):

Annotation Number : CG8807
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020277
Gbrowse : chr3L:19597496-19599190 (-) // 100.0 //
Probeset : 1626882_at
Accessions : protein= NP_001163468; /// NP_524162;, nucleotide= NM_001169997; /// NM_079438;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded /// 000
FlyMine data for FBgn0020277.
TRiP has 1 RNAi stocks for FBgn0020277 available for purchase.
VDRC has 4 RNAi stocks for FBgn0020277 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head735 544 of 414.20Up
Eye98 484 of 4 1.90None
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland2 10 of 4 0.06Down
Crop0 00 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule3 00 of 4 0.10Down
Hindgut1 00 of 4 0.00Down
Heart15 14 of 4 0.29Down
Fat body25 92 of 4 0.48Down
Ovary0 00 of 4 0.00Down
Testis5 00 of 4 0.10Down
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca40 14 of 4 0.78None
Mated spermatheca27 31 of 4 0.53Down
Adult carcass18 30 of 4 0.40Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland0 00 of 4 0.02Down
Larval midgut2 00 of 4 0.05Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 00 of 4 0.05Down
Larval fat body4 10 of 4 0.10Down
Larval trachea4 30 of 4 0.09Down
Larval carcass3 10 of 4 0.07Down
S2 cells (growing)12 10 of 4 0.23Down
Whole fly51 74 of 4

Looking for FBgn0020277. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime