FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0020300 through 18771 annotations produced 1 hits

geko (gk):

Annotation Number : CG13695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020300
Gbrowse : chr3L:18132503-18138520 (+) // 100.0 //
Probeset : 1634113_at
Accessions : protein= NP_524980;, nucleotide= NM_080241;
FlyMine data for FBgn0020300.
BDGP gene expression has embryonic in situ data for gk: 39 pix of staining in 17 body parts.
VDRC has 1 RNAi stocks for FBgn0020300 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	1 of 4	0.10	Down
Head	62 ± 5	4 of 4	0.50	Down
Eye	29 ± 3	4 of 4	0.26	Down
Thoracicoabdominal ganglion	11 ± 0	4 of 4	0.10	Down
Salivary gland	22 ± 1	3 of 4	0.20	Down
Crop	249 ± 10	4 of 4	2.20	Up
Midgut	18 ± 1	4 of 4	0.20	Down
Tubule	11 ± 1	1 of 4	0.10	Down
Hindgut	59 ± 3	4 of 4	0.50	Down
Heart	522 ± 34	4 of 4	4.53	Up
Fat body	494 ± 59	4 of 4	4.30	Up
Ovary	20 ± 1	4 of 4	0.20	Down
Testis	611 ± 24	4 of 4	5.30	Up
Male accessory glands	18 ± 2	3 of 4	0.20	Down
Virgin spermatheca	33 ± 2	4 of 4	0.29	Down
Mated spermatheca	51 ± 8	4 of 4	0.44	Down
Adult carcass	454 ± 42	4 of 4	3.90	Up
Larval CNS	8 ± 1	4 of 4	0.08	Down
Larval Salivary gland	997 ± 78	4 of 4	8.66	Up
Larval midgut	25 ± 2	4 of 4	0.22	Down
Larval tubule	14 ± 0	3 of 4	0.10	Down
Larval hindgut	95 ± 6	4 of 4	0.83	None
Larval fat body	139 ± 63	4 of 4	1.20	None
Larval trachea	210 ± 33	4 of 4	1.83	Up
Larval carcass	260 ± 9	4 of 4	2.26	Up
S2 cells (growing)	3 ± 0	0 of 4	0.03	Down
Whole fly	115 ± 14	4 of 4

Looking for FBgn0020300. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720