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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020304 through 18771 annotations produced 1 hits



drongo (drongo):

Annotation Number : CG3365
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020304
Gbrowse : chr2L:833583-851061 (-) // 100.0 //
Probeset : 1623693_a_at
Accessions : protein= NP_001137763; /// NP_001137764; /// NP_001162848; /// NP_001162849; /// NP_477239; /// NP_722659; /// NP_722660;, nucleotide= NM_001144291; /// NM_001144292; /// NM_001169377; /// NM_001169378; /// NM_057891; /// NM_164391; /// NM_164392;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008060 // ARF GTPase activator activity // inferre
FlyMine data for FBgn0020304.
BDGP gene expression has embryonic in situ data for drongo: 51 pix of staining in 22 body parts.
BioGrid reports that CG3365 interacts with CG8783 CG4807 CG5920 CG6544 CG7570 CG7808 CG7954 CG8060 CG9233 CG9267 .
TRiP has 1 RNAi stocks for FBgn0020304 available for purchase.
VDRC has 3 RNAi stocks for FBgn0020304 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain453 184 of 4 2.00Up
Head409 204 of 4 1.80Up
Eye979 144 of 4 4.31Up
Thoracicoabdominal ganglion579 104 of 4 2.60Up
Salivary gland203 84 of 4 0.90None
Crop1353 334 of 4 6.00Up
Midgut193 34 of 4 0.90Down
Tubule256 44 of 4 1.10Up
Hindgut698 144 of 4 3.10Up
Heart559 484 of 4 2.46Up
Fat body289 424 of 4 1.28None
Ovary222 64 of 4 1.00None
Testis146 154 of 4 0.60Down
Male accessory glands104 104 of 4 0.50Down
Virgin spermatheca753 294 of 4 3.32Up
Mated spermatheca531 604 of 4 2.34Up
Adult carcass427 104 of 4 1.90Up
Larval CNS215 94 of 4 0.95None
Larval Salivary gland214 174 of 4 0.94None
Larval midgut162 314 of 4 0.71None
Larval tubule265 134 of 4 1.20None
Larval hindgut297 284 of 4 1.31None
Larval fat body960 634 of 4 4.20Up
Larval trachea643 1224 of 4 2.83Up
Larval carcass737 784 of 4 3.25Up
S2 cells (growing)1155 284 of 4 5.09Up
Whole fly227 104 of 4

Looking for FBgn0020304. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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