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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020305 through 18771 annotations produced 1 hits



dribble (dbe):

Annotation Number : CG4258
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020305
Gbrowse : chr2L:868674-869911 (-) // 100.0 //
Probeset : 1632223_at
Accessions : protein= NP_477240;, nucleotide= NM_057892;
Pathway : 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay
Interpro : 0003723 // RNA binding // inferred from electronic annotation
FlyMine data for FBgn0020305.
BioGrid reports that CG4258 interacts with CG4896 CG8057 CG8863 .
VDRC has 3 RNAi stocks for FBgn0020305 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 24 of 4 0.80Down
Head42 ± 14 of 4 0.70Down
Eye37 ± 34 of 4 0.59Down
Thoracicoabdominal ganglion34 ± 34 of 4 0.60Down
Salivary gland31 ± 43 of 4 0.50Down
Crop40 ± 44 of 4 0.60Down
Midgut55 ± 24 of 4 0.90None
Tubule48 ± 64 of 4 0.80Down
Hindgut31 ± 24 of 4 0.50Down
Heart34 ± 14 of 4 0.55Down
Fat body50 ± 104 of 4 0.79None
Ovary146 ± 34 of 4 2.30Up
Testis33 ± 44 of 4 0.50Down
Male accessory glands61 ± 44 of 4 1.00None
Virgin spermatheca26 ± 14 of 4 0.42Down
Mated spermatheca27 ± 44 of 4 0.44Down
Adult carcass28 ± 24 of 4 0.50Down
Larval CNS110 ± 114 of 4 1.75Up
Larval Salivary gland53 ± 34 of 4 0.85None
Larval midgut37 ± 34 of 4 0.59Down
Larval tubule31 ± 44 of 4 0.50Down
Larval hindgut42 ± 44 of 4 0.68Down
Larval fat body27 ± 03 of 4 0.40Down
Larval trachea74 ± 44 of 4 1.19Up
Larval carcass46 ± 74 of 4 0.73None
S2 cells (growing)199 ± 64 of 4 3.17Up
Whole fly62 ± 34 of 4

Looking for FBgn0020305. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime