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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020306 through 18771 annotations produced 3 hits



domino (dom):

Annotation Number : CG9696
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020306
Gbrowse : chr2R:17210948-17224453 (+) // 100.0 //
Probeset : 1633331_at
Accessions : protein= NP_001163237; /// NP_524833; /// NP_726065; /// NP_788424;, nucleotide= NM_001169766; /// NM_080094; /// NM_166446; /// NM_176244;
Pathway : via spliceosome // inferred from mutant phenotype /// 0002165 // instar larval or pupal development // inferred from mu
Interpro : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus //
FlyMine data for FBgn0020306.
Homophila reports that CG9696 is a close match (2e-13) to human gene HARP;SIOD;SMARCAL1 (NP_054859), a gene associated with Schimke immunoosseous dysplasia, 242900 (3).
BioGrid reports that CG9696 interacts with CG5942 CG6502 CG32443 CG8651 CG18412 CG8887 CG12058 .
TRiP has 6 RNAi stocks for FBgn0020306 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020306 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 24 of 4 0.40Down
Head71 44 of 4 0.30Down
Eye44 44 of 4 0.17Down
Thoracicoabdominal ganglion76 24 of 4 0.30Down
Salivary gland90 34 of 4 0.34Down
Crop96 24 of 4 0.40Down
Midgut132 64 of 4 0.50Down
Tubule127 104 of 4 0.50Down
Hindgut89 94 of 4 0.30Down
Heart70 44 of 4 0.27Down
Fat body162 184 of 4 0.61Down
Ovary875 94 of 4 3.30Up
Testis79 34 of 4 0.30Down
Male accessory glands117 74 of 4 0.40Down
Virgin spermatheca138 84 of 4 0.52Down
Mated spermatheca158 114 of 4 0.59Down
Adult carcass75 54 of 4 0.30Down
Larval CNS530 844 of 4 1.98Up
Larval Salivary gland285 134 of 4 1.07None
Larval midgut133 84 of 4 0.50Down
Larval tubule148 44 of 4 0.60Down
Larval hindgut180 204 of 4 0.68Down
Larval fat body101 24 of 4 0.40Down
Larval trachea252 534 of 4 0.94None
Larval carcass201 304 of 4 0.76None
S2 cells (growing)177 74 of 4 0.66Down
Whole fly267 184 of 4



domino (dom):

Annotation Number : CG9696
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020306
Gbrowse : chr2R:17210948-17229346 (+) // 100.0 //
Probeset : 1636034_at
Accessions : protein= NP_001163237; /// NP_524833; /// NP_726065; /// NP_788424;, nucleotide= NM_001169766; /// NM_080094; /// NM_166446; /// NM_176244;
Pathway : via spliceosome // inferred from mutant phenotype /// 0002165 // instar larval or pupal development // inferred from mu
Interpro : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus //
FlyMine data for FBgn0020306.
Homophila reports that CG9696 is a close match (2e-13) to human gene HARP;SIOD;SMARCAL1 (NP_054859), a gene associated with Schimke immunoosseous dysplasia, 242900 (3).
BioGrid reports that CG9696 interacts with CG5942 CG6502 CG32443 CG8651 CG18412 CG8887 CG12058 .
TRiP has 6 RNAi stocks for FBgn0020306 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020306 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 24 of 4 0.20Down
Head11 13 of 4 0.10Down
Eye13 14 of 4 0.11Down
Thoracicoabdominal ganglion21 11 of 4 0.20Down
Salivary gland23 40 of 4 0.18Down
Crop35 54 of 4 0.30Down
Midgut46 44 of 4 0.40Down
Tubule22 21 of 4 0.20Down
Hindgut33 14 of 4 0.30Down
Heart20 14 of 4 0.17Down
Fat body43 134 of 4 0.35Down
Ovary481 344 of 4 3.90Up
Testis49 34 of 4 0.40Down
Male accessory glands67 44 of 4 0.50Down
Virgin spermatheca21 44 of 4 0.17Down
Mated spermatheca26 33 of 4 0.21Down
Adult carcass28 62 of 4 0.20Down
Larval CNS515 174 of 4 4.12Up
Larval Salivary gland147 104 of 4 1.18None
Larval midgut51 54 of 4 0.41Down
Larval tubule31 44 of 4 0.30Down
Larval hindgut94 124 of 4 0.76None
Larval fat body40 34 of 4 0.30Down
Larval trachea237 324 of 4 1.90Up
Larval carcass157 184 of 4 1.26None
S2 cells (growing)187 34 of 4 1.50Up
Whole fly125 104 of 4



domino (dom):

Annotation Number : CG9696
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020306
Gbrowse : chr2R:17210948-17229346 (+) // 100.0 //
Probeset : 1628160_a_at
Accessions : protein= NP_001163237; /// NP_524833; /// NP_726065; /// NP_788424;, nucleotide= NM_001169766; /// NM_080094; /// NM_166446; /// NM_176244;
Pathway : via spliceosome // inferred from mutant phenotype /// 0002165 // instar larval or pupal development // inferred from mu
Interpro : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus //
FlyMine data for FBgn0020306.
Homophila reports that CG9696 is a close match (2e-13) to human gene HARP;SIOD;SMARCAL1 (NP_054859), a gene associated with Schimke immunoosseous dysplasia, 242900 (3).
BioGrid reports that CG9696 interacts with CG5942 CG6502 CG32443 CG8651 CG18412 CG8887 CG12058 .
TRiP has 6 RNAi stocks for FBgn0020306 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020306 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain116 24 of 4 1.20Up
Head64 34 of 4 0.70Down
Eye89 64 of 4 0.93None
Thoracicoabdominal ganglion84 24 of 4 0.90Down
Salivary gland163 304 of 4 1.69None
Crop78 34 of 4 0.80Down
Midgut112 34 of 4 1.20Up
Tubule97 24 of 4 1.00None
Hindgut91 54 of 4 0.90None
Heart89 24 of 4 0.93None
Fat body118 34 of 4 1.23Up
Ovary243 64 of 4 2.50Up
Testis40 34 of 4 0.40Down
Male accessory glands210 134 of 4 2.20Up
Virgin spermatheca122 24 of 4 1.27Up
Mated spermatheca160 184 of 4 1.66Up
Adult carcass79 74 of 4 0.80None
Larval CNS275 174 of 4 2.86Up
Larval Salivary gland258 64 of 4 2.68Up
Larval midgut140 24 of 4 1.45Up
Larval tubule137 24 of 4 1.40Up
Larval hindgut151 124 of 4 1.57Up
Larval fat body62 24 of 4 0.70Down
Larval trachea169 184 of 4 1.76Up
Larval carcass163 114 of 4 1.70Up
S2 cells (growing)83 54 of 4 0.87None
Whole fly96 34 of 4

Looking for FBgn0020306. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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