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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020307 through 18771 annotations produced 2 hits



defective proventriculus (dve):

Annotation Number : CG5799
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020307
Gbrowse : chr2R:18131467-18173923 (+) // 100.0 //
Probeset : 1631542_a_at
Accessions : protein= NP_477241; /// NP_477242;, nucleotide= NM_057893; /// NM_057894;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007476 // imaginal disc-derived wing morphogenesis // inferre
FlyMine data for FBgn0020307.
BDGP gene expression has embryonic in situ data for dve: 12 pix of staining in 2 body parts.
TRiP has 1 RNAi stocks for FBgn0020307 available for purchase.
VDRC has 4 RNAi stocks for FBgn0020307 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 14 of 4 2.60Up
Head39 54 of 4 1.50None
Eye98 104 of 4 3.77Up
Thoracicoabdominal ganglion85 74 of 4 3.30Up
Salivary gland10 30 of 4 0.39Down
Crop8 21 of 4 0.30Down
Midgut268 44 of 410.20Up
Tubule14 13 of 4 0.60Down
Hindgut28 24 of 4 1.10None
Heart1 00 of 4 0.07Down
Fat body6 21 of 4 0.23Down
Ovary0 00 of 4 0.00Down
Testis4 11 of 4 0.20Down
Male accessory glands326 94 of 412.40Up
Virgin spermatheca8 12 of 4 0.32Down
Mated spermatheca11 14 of 4 0.45Down
Adult carcass12 31 of 4 0.50Down
Larval CNS128 74 of 4 4.88Up
Larval Salivary gland5 10 of 4 0.22Down
Larval midgut176 64 of 4 6.73Up
Larval tubule37 14 of 4 1.40Up
Larval hindgut68 44 of 4 2.61Up
Larval fat body4 10 of 4 0.20Down
Larval trachea6 12 of 4 0.24Down
Larval carcass23 34 of 4 0.89None
S2 cells (growing)2 00 of 4 0.10Down
Whole fly26 04 of 4



defective proventriculus (dve):

Annotation Number : CG5799
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020307
Gbrowse : chr2R:18131467-18150995 (+) // 100.0 //
Probeset : 1630292_a_at
Accessions : protein= NP_477241; /// NP_477242;, nucleotide= NM_057893; /// NM_057894;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007476 // imaginal disc-derived wing morphogenesis // inferre
FlyMine data for FBgn0020307.
BDGP gene expression has embryonic in situ data for dve: 12 pix of staining in 2 body parts.
TRiP has 1 RNAi stocks for FBgn0020307 available for purchase.
VDRC has 4 RNAi stocks for FBgn0020307 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 10 of 4 1.10None
Head11 12 of 4 1.20None
Eye3 10 of 4 0.41Down
Thoracicoabdominal ganglion6 20 of 4 0.70None
Salivary gland16 20 of 4 1.79None
Crop10 00 of 4 1.10None
Midgut14 10 of 4 1.50None
Tubule7 10 of 4 0.80None
Hindgut7 20 of 4 0.70None
Heart10 20 of 4 1.08None
Fat body16 42 of 4 1.76Up
Ovary6 20 of 4 0.70None
Testis1 00 of 4 0.10Down
Male accessory glands36 34 of 4 3.90Up
Virgin spermatheca7 10 of 4 0.78None
Mated spermatheca14 20 of 4 1.56None
Adult carcass20 31 of 4 2.20None
Larval CNS7 10 of 4 0.76Down
Larval Salivary gland10 20 of 4 1.11None
Larval midgut20 30 of 4 2.17None
Larval tubule6 10 of 4 0.60Down
Larval hindgut9 30 of 4 0.95None
Larval fat body6 20 of 4 0.70None
Larval trachea8 40 of 4 0.85None
Larval carcass9 30 of 4 1.04None
S2 cells (growing)7 10 of 4 0.79None
Whole fly9 00 of 4

Looking for FBgn0020307. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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