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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020309 through 18771 annotations produced 1 hits



crooked legs (crol):

Annotation Number : CG14938
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020309
Gbrowse : chr2L:11794326-11809433 (-) // 100.0 //
Probeset : 1626018_a_at
Accessions : protein= NP_477243; /// NP_477244; /// NP_477245; /// NP_723687;, nucleotide= NM_057895; /// NM_057896; /// NM_057897; /// NM_164971;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription fa
FlyMine data for FBgn0020309.
BDGP gene expression has embryonic in situ data for crol: 16 pix of staining in 3 body parts.
Homophila reports that CG14938 is a close match (8e-11) to human gene HSAL4;SALL4 (NP_065169), a gene associated with Duane-radial ray syndrome, 607323 (3);IVIC syndrome, 147750 (3).
BioGrid reports that CG14938 interacts with CG16747 CG9331 CG9623 CG3340 CG1560 .
TRiP has 1 RNAi stocks for FBgn0020309 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020309 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain796 ± 184 of 410.40Up
Head246 ± 144 of 4 3.20Up
Eye239 ± 174 of 4 3.14Up
Thoracicoabdominal ganglion548 ± 234 of 4 7.20Up
Salivary gland159 ± 64 of 4 2.08Up
Crop147 ± 34 of 4 1.90Up
Midgut68 ± 14 of 4 0.90None
Tubule59 ± 34 of 4 0.80Down
Hindgut171 ± 14 of 4 2.20Up
Heart111 ± 84 of 4 1.45Up
Fat body71 ± 94 of 4 0.93None
Ovary25 ± 14 of 4 0.30Down
Testis19 ± 14 of 4 0.30Down
Male accessory glands224 ± 74 of 4 2.90Up
Virgin spermatheca77 ± 104 of 4 1.01None
Mated spermatheca90 ± 134 of 4 1.18None
Adult carcass115 ± 34 of 4 1.50Up
Larval CNS832 ± 1004 of 410.90Up
Larval Salivary gland180 ± 94 of 4 2.36Up
Larval midgut67 ± 44 of 4 0.88None
Larval tubule80 ± 64 of 4 1.00None
Larval hindgut136 ± 24 of 4 1.79Up
Larval fat body54 ± 54 of 4 0.70Down
Larval trachea194 ± 94 of 4 2.54Up
Larval carcass124 ± 24 of 4 1.64Up
S2 cells (growing)304 ± 104 of 4 3.99Up
Whole fly76 ± 54 of 4

Looking for FBgn0020309. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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