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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020369 through 18771 annotations produced 1 hits



chrX:21187086-21188690 (+) // 100.0 // (Pros45):

Annotation Number : CG1489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1639784_at
Accessions : protein= , nucleotide= NP_608447;
Pathway : 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from sequence or structural
Interpro : "0000502 // proteasome complex // non-traceable author statement /// 0000502 // proteasome complex // inferred from elec
FlyMine data for full length.
Homophila reports that CG1489 is a close match (4e-14) to human gene BCS1L;BJS;FLNMS;GRACILE;PTD (NP_004319), a gene associated with Bjornstad syndrome, 262000 (3);GRACILE syndrome, 603358 (3);Leigh syndrome, 256000 (3);Mitochondrial complex III deficiency, 124000 (3).
BioGrid reports that CG1489 interacts with CG5429 CG7404 CG7698 CG3325 CG3851 CG4832 CG4980 CG7238 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain423 104 of 4 0.60Down
Head449 164 of 4 0.60Down
Eye516 144 of 4 0.70Down
Thoracicoabdominal ganglion452 154 of 4 0.60Down
Salivary gland602 164 of 4 0.82Down
Crop738 104 of 4 1.00None
Midgut759 244 of 4 1.00None
Tubule977 484 of 4 1.30Up
Hindgut646 124 of 4 0.90Down
Heart1155 474 of 4 1.57Up
Fat body1013 1054 of 4 1.38Up
Ovary1030 134 of 4 1.40Up
Testis301 44 of 4 0.40Down
Male accessory glands538 444 of 4 0.70Down
Virgin spermatheca507 334 of 4 0.69Down
Mated spermatheca446 464 of 4 0.61Down
Adult carcass873 194 of 4 1.20Up
Larval CNS768 424 of 4 1.04None
Larval Salivary gland917 854 of 4 1.25None
Larval midgut994 864 of 4 1.35None
Larval tubule2232 204 of 4 3.00Up
Larval hindgut986 484 of 4 1.34Up
Larval fat body911 874 of 4 1.20None
Larval trachea672 874 of 4 0.91None
Larval carcass1416 1434 of 4 1.93Up
S2 cells (growing)771 54 of 4 1.05None
Whole fly735 154 of 4

Looking for FBgn0020369. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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