FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0020370 through 18771 annotations produced 1 hits

tripeptidyl peptidase II (TppII):

Annotation Number : CG3991
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020370
Gbrowse : chr2R:9040392-9046595 (-) // 100.0 //
Probeset : 1625908_a_at
Accessions : protein= NP_477247; /// NP_725252;, nucleotide= NM_057899; /// NM_165966;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activ
FlyMine data for FBgn0020370.
BDGP gene expression has embryonic in situ data for TppII: 17 pix of staining in 21 body parts.
BioGrid reports that CG3991 interacts with CG4367 CG4755 CG5121 CG5134 .
VDRC has 3 RNAi stocks for FBgn0020370 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	349 ± 10	4 of 4	0.50	Down
Head	311 ± 10	4 of 4	0.50	Down
Eye	175 ± 5	4 of 4	0.27	Down
Thoracicoabdominal ganglion	453 ± 23	4 of 4	0.70	Down
Salivary gland	681 ± 9	4 of 4	1.07	None
Crop	425 ± 15	4 of 4	0.70	Down
Midgut	599 ± 17	4 of 4	0.90	None
Tubule	490 ± 26	4 of 4	0.80	Down
Hindgut	441 ± 3	4 of 4	0.70	Down
Heart	372 ± 16	4 of 4	0.58	Down
Fat body	411 ± 29	4 of 4	0.64	Down
Ovary	985 ± 21	4 of 4	1.50	Up
Testis	229 ± 4	4 of 4	0.40	Down
Male accessory glands	645 ± 8	4 of 4	1.00	None
Virgin spermatheca	384 ± 20	4 of 4	0.60	Down
Mated spermatheca	430 ± 12	4 of 4	0.67	Down
Adult carcass	383 ± 10	4 of 4	0.60	Down
Larval CNS	538 ± 17	4 of 4	0.84	Down
Larval Salivary gland	1765 ± 151	4 of 4	2.76	Up
Larval midgut	724 ± 25	4 of 4	1.13	Up
Larval tubule	1726 ± 56	4 of 4	2.70	Up
Larval hindgut	980 ± 51	4 of 4	1.53	Up
Larval fat body	688 ± 44	4 of 4	1.10	None
Larval trachea	755 ± 30	4 of 4	1.18	Up
Larval carcass	1341 ± 134	4 of 4	2.10	Up
S2 cells (growing)	620 ± 17	4 of 4	0.97	None
Whole fly	639 ± 14	4 of 4

Looking for FBgn0020370. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720