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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020372 through 18771 annotations produced 1 hits



Transmembrane 4 superfamily (TM4SF):

Annotation Number : CG11303
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020372
Gbrowse : chr2R:19765981-19768383 (+) // 100.0 //
Probeset : 1633696_at
Accessions : protein= NP_001033968; /// NP_477248;, nucleotide= NM_001038879; /// NM_057900;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
FlyMine data for FBgn0020372.
BDGP gene expression has embryonic in situ data for TM4SF: 20 pix of staining in 2 body parts.
TRiP has 1 RNAi stocks for FBgn0020372 available for purchase.
VDRC has 3 RNAi stocks for FBgn0020372 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2522 ± 834 of 419.40Up
Head803 ± 314 of 4 6.20Up
Eye256 ± 94 of 4 1.97Up
Thoracicoabdominal ganglion2290 ± 554 of 417.60Up
Salivary gland51 ± 54 of 4 0.40Down
Crop29 ± 14 of 4 0.20Down
Midgut25 ± 14 of 4 0.20Down
Tubule16 ± 12 of 4 0.10Down
Hindgut34 ± 14 of 4 0.30Down
Heart32 ± 14 of 4 0.25Down
Fat body27 ± 34 of 4 0.21Down
Ovary26 ± 24 of 4 0.20Down
Testis28 ± 14 of 4 0.20Down
Male accessory glands34 ± 04 of 4 0.30Down
Virgin spermatheca17 ± 14 of 4 0.13Down
Mated spermatheca19 ± 04 of 4 0.15Down
Adult carcass71 ± 54 of 4 0.50Down
Larval CNS764 ± 864 of 4 5.89Up
Larval Salivary gland25 ± 34 of 4 0.19Down
Larval midgut14 ± 20 of 4 0.11Down
Larval tubule20 ± 14 of 4 0.20Down
Larval hindgut36 ± 34 of 4 0.28Down
Larval fat body30 ± 24 of 4 0.20Down
Larval trachea23 ± 83 of 4 0.18Down
Larval carcass37 ± 34 of 4 0.29Down
S2 cells (growing)23 ± 24 of 4 0.18Down
Whole fly129 ± 74 of 4

Looking for FBgn0020372. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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