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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020376 through 18771 annotations produced 1 hits



Scavenger Receptor (Sr-CIII):

Annotation Number : CG31962
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020376
Gbrowse : chr2L:4120362-4121442 (+) // 100.0 //
Probeset : 1631505_at
Accessions : protein= NP_524747;, nucleotide= NM_080008;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005044 // scavenger receptor activity // inferr
FlyMine data for FBgn0020376.
VDRC has 3 RNAi stocks for FBgn0020376 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.70None
Head2 ± 10 of 4 1.30None
Eye2 ± 00 of 4 1.31None
Thoracicoabdominal ganglion1 ± 00 of 4 1.00None
Salivary gland6 ± 40 of 4 3.24None
Crop3 ± 10 of 4 1.70None
Midgut2 ± 00 of 4 1.10None
Tubule7 ± 10 of 4 3.60Up
Hindgut2 ± 10 of 4 1.40None
Heart1 ± 00 of 4 0.79None
Fat body1 ± 00 of 4 0.66None
Ovary0 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.50None
Male accessory glands1 ± 00 of 4 0.60None
Virgin spermatheca2 ± 00 of 4 1.43None
Mated spermatheca5 ± 20 of 4 2.48None
Adult carcass3 ± 10 of 4 1.70None
Larval CNS0 ± 00 of 4 0.43None
Larval Salivary gland1 ± 00 of 4 0.71None
Larval midgut3 ± 00 of 4 1.51None
Larval tubule26 ± 44 of 413.00Up
Larval hindgut3 ± 20 of 4 1.64None
Larval fat body10 ± 20 of 4 5.10None
Larval trachea2 ± 30 of 4 1.44None
Larval carcass7 ± 20 of 4 3.80None
S2 cells (growing)1 ± 00 of 4 0.65None
Whole fly2 ± 10 of 4

Looking for FBgn0020376. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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