Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020386 through 18771 annotations produced 1 hits



Phosphoinositide dependent kinase 1 (Pk61C):

Annotation Number : CG1210
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020386
Gbrowse : chr3L:129451-145305 (+) // 100.0 //
Probeset : 1629078_s_at
Accessions : protein= NP_525121; /// NP_728470; /// NP_728471; /// NP_728472; /// NP_728473; /// NP_728474; /// NP_728475; /// NP_728476;, nucleotide= NM_080382; /// NM_167789; /// NM_167790; /// NM_167791; /// NM_167792; /// NM_167793; /// NM_167794; /// NM_167795;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electr
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0020386.
BDGP gene expression has embryonic in situ data for Pk61C: 19 pix of staining in 13 body parts.
Homophila reports that CG1210 is a close match (2e-12) to human gene DM;DMK;DMPK (NP_001075032), a gene associated with Myotonic dystrophy, 160900 (3).
BioGrid reports that CG1210 interacts with CG5815 CG6930 CG9074 CG12432 CG17592 CG4060 CG9925 CG4006 CG4006 CG4006 CG4006 CG17596 CG18402 CG18402 CG4141 CG4141 CG10539 CG10539 CG10539 CG10539 .
TRiP has 3 RNAi stocks for FBgn0020386 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020386 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain360 144 of 4 1.30Up
Head416 124 of 4 1.50Up
Eye770 544 of 4 2.79Up
Thoracicoabdominal ganglion301 204 of 4 1.10None
Salivary gland177 34 of 4 0.64Down
Crop517 94 of 4 1.90Up
Midgut349 314 of 4 1.30None
Tubule386 214 of 4 1.40Up
Hindgut323 104 of 4 1.20Up
Heart679 504 of 4 2.46Up
Fat body570 874 of 4 2.06Up
Ovary436 64 of 4 1.60Up
Testis29 34 of 4 0.10Down
Male accessory glands105 64 of 4 0.40Down
Virgin spermatheca465 234 of 4 1.68Up
Mated spermatheca399 94 of 4 1.44Up
Adult carcass376 204 of 4 1.40Up
Larval CNS313 454 of 4 1.14None
Larval Salivary gland324 254 of 4 1.17None
Larval midgut242 64 of 4 0.88Down
Larval tubule710 234 of 4 2.60Up
Larval hindgut248 44 of 4 0.90Down
Larval fat body382 144 of 4 1.40Up
Larval trachea219 204 of 4 0.79Down
Larval carcass326 284 of 4 1.18None
S2 cells (growing)284 124 of 4 1.03None
Whole fly276 84 of 4

Looking for FBgn0020386. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime