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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020389 through 18771 annotations produced 1 hits



paps synthetase (Papss):

Annotation Number : CG8363
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020389
Gbrowse : chr3L:19838396-19854033 (+) // 100.0 //
Probeset : 1634522_s_at
Accessions : protein= NP_001036617; /// NP_524171; /// NP_730457; /// NP_730458; /// NP_730459; /// NP_730460;, nucleotide= NM_001043152; /// NM_079447; /// NM_168821; /// NM_168822; /// NM_168823; /// NM_168824;
Interpro : "0004020 // adenylylsulfate kinase activity // inferred from sequence or structural similarity /// 0004020 // adenylylsu
FlyMine data for FBgn0020389.
BDGP gene expression has embryonic in situ data for Paps: 21 pix of staining in 8 body parts.
Homophila reports that CG8363 is a close match (0) to human gene ATPSK2;PAPSS2 (NP_004661), a gene associated with SEMD, Pakistani type (3).
BioGrid reports that CG8363 interacts with CG8368 .
TRiP has 1 RNAi stocks for FBgn0020389 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020389 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 ± 44 of 4 1.30Up
Head121 ± 184 of 4 1.40None
Eye49 ± 54 of 4 0.58Down
Thoracicoabdominal ganglion100 ± 34 of 4 1.20None
Salivary gland361 ± 114 of 4 4.25Up
Crop40 ± 32 of 4 0.50Down
Midgut100 ± 64 of 4 1.20None
Tubule135 ± 154 of 4 1.60Up
Hindgut68 ± 64 of 4 0.80None
Heart89 ± 74 of 4 1.05None
Fat body351 ± 734 of 4 4.14Up
Ovary124 ± 54 of 4 1.50Up
Testis19 ± 21 of 4 0.20Down
Male accessory glands55 ± 132 of 4 0.70None
Virgin spermatheca258 ± 344 of 4 3.05Up
Mated spermatheca440 ± 724 of 4 5.18Up
Adult carcass109 ± 104 of 4 1.30None
Larval CNS70 ± 74 of 4 0.83None
Larval Salivary gland1044 ± 484 of 412.30Up
Larval midgut95 ± 133 of 4 1.12None
Larval tubule70 ± 34 of 4 0.80None
Larval hindgut80 ± 24 of 4 0.95None
Larval fat body529 ± 524 of 4 6.20Up
Larval trachea73 ± 94 of 4 0.86None
Larval carcass52 ± 31 of 4 0.62Down
S2 cells (growing)94 ± 54 of 4 1.11None
Whole fly84 ± 64 of 4

Looking for FBgn0020389. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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