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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020445 through 18771 annotations produced 1 hits



Early gene at 23 (E23):

Annotation Number : CG3327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020445
Gbrowse : chr2L:3334870-3355000 (-) // 100.0 //
Probeset : 1628224_a_at
Accessions : protein= NP_524648; /// NP_608768; /// NP_995622;, nucleotide= NM_079909; /// NM_134924; /// NM_205900;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0043190 // ATP-binding cassette (ABC) transporter complex
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // non-traceab
FlyMine data for FBgn0020445.
Homophila reports that CG3327 is a close match (4e-11) to human gene ABCA3;ABC3;SMDP3 (NP_001080), a gene associated with Surfactant metabolism dysfunction, pulmonary, 3, 610921 (3).
BioGrid reports that CG3327 interacts with CG4060 .
TRiP has 1 RNAi stocks for FBgn0020445 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020445 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 34 of 4 0.50Down
Head52 24 of 4 0.30Down
Eye27 34 of 4 0.17Down
Thoracicoabdominal ganglion99 34 of 4 0.60Down
Salivary gland113 24 of 4 0.70Down
Crop92 34 of 4 0.60Down
Midgut37 14 of 4 0.20Down
Tubule215 364 of 4 1.30None
Hindgut199 34 of 4 1.20Up
Heart22 24 of 4 0.14Down
Fat body26 64 of 4 0.16Down
Ovary696 304 of 4 4.30Up
Testis12 04 of 4 0.10Down
Male accessory glands49 44 of 4 0.30Down
Virgin spermatheca23 34 of 4 0.14Down
Mated spermatheca21 34 of 4 0.13Down
Adult carcass36 23 of 4 0.20Down
Larval CNS30 94 of 4 0.19Down
Larval Salivary gland47 44 of 4 0.30Down
Larval midgut215 804 of 4 1.33None
Larval tubule1484 1154 of 4 9.20Up
Larval hindgut183 414 of 4 1.13None
Larval fat body1220 1214 of 4 7.50Up
Larval trachea33 44 of 4 0.21Down
Larval carcass164 594 of 4 1.02None
S2 cells (growing)1 00 of 4 0.01Down
Whole fly161 64 of 4

Looking for FBgn0020445. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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