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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020510 through 18771 annotations produced 1 hits



Abelson Interacting Protein (Abi):

Annotation Number : CG9749
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020510
Gbrowse : chr3R:9944975-9948142 (-) // 100.0 //
Probeset : 1632196_at
Accessions : protein= NP_001097785; /// NP_477263;, nucleotide= NM_001104315; /// NM_057915;
Pathway : engulfment // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007528
Interpro : 0005737 // cytoplasm // inferred from electronic annotation /// 0031258 // lamellipodium membrane // inferred from direc
FlyMine data for FBgn0020510.
BDGP gene expression has embryonic in situ data for Abi: 4 pix of staining in 1 body parts.
BioGrid reports that CG9749 interacts with CG9951 .
TRiP has 1 RNAi stocks for FBgn0020510 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020510 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain262 ± 54 of 4 1.50Up
Head152 ± 34 of 4 0.80Down
Eye136 ± 24 of 4 0.76Down
Thoracicoabdominal ganglion219 ± 24 of 4 1.20Up
Salivary gland233 ± 34 of 4 1.29Up
Crop210 ± 44 of 4 1.20Up
Midgut219 ± 84 of 4 1.20Up
Tubule155 ± 24 of 4 0.90Down
Hindgut212 ± 24 of 4 1.20Up
Heart147 ± 84 of 4 0.81Down
Fat body158 ± 34 of 4 0.88None
Ovary307 ± 14 of 4 1.70Up
Testis190 ± 44 of 4 1.10None
Male accessory glands231 ± 194 of 4 1.30None
Virgin spermatheca149 ± 94 of 4 0.82Down
Mated spermatheca156 ± 44 of 4 0.87None
Adult carcass144 ± 84 of 4 0.80Down
Larval CNS356 ± 44 of 4 1.97Up
Larval Salivary gland306 ± 124 of 4 1.70Up
Larval midgut296 ± 134 of 4 1.64Up
Larval tubule225 ± 64 of 4 1.20Up
Larval hindgut286 ± 34 of 4 1.59Up
Larval fat body221 ± 114 of 4 1.20Up
Larval trachea255 ± 244 of 4 1.41Up
Larval carcass288 ± 64 of 4 1.59Up
S2 cells (growing)604 ± 104 of 4 3.34Up
Whole fly180 ± 84 of 4

Looking for FBgn0020510. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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