FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0020620 through 18771 annotations produced 4 hits

tre oncogene-related protein (RN-tre):

Annotation Number : CG8085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020620
Gbrowse : chr2R:9874545-9878191 (-) // 100.0 //
Probeset : 1633470_at
Accessions : protein= NP_523736; /// NP_652381; /// NP_725351;, nucleotide= NM_079012; /// NM_144124; /// NM_166028;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0020620.
BDGP gene expression has embryonic in situ data for RN-tre: 4 pix of staining in 1 body parts.
BioGrid reports that CG8085 interacts with CG9675 .
TRiP has 1 RNAi stocks for FBgn0020620 available for purchase.
VDRC has 3 RNAi stocks for FBgn0020620 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.40	Down
Head	1 ± 0	0 of 4	0.20	Down
Eye	2 ± 1	0 of 4	0.41	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.50	Down
Salivary gland	6 ± 2	0 of 4	1.14	None
Crop	2 ± 0	0 of 4	0.50	None
Midgut	5 ± 2	0 of 4	0.90	None
Tubule	0 ± 0	0 of 4	0.20	Down
Hindgut	5 ± 0	0 of 4	1.00	None
Heart	8 ± 0	0 of 4	1.50	None
Fat body	1 ± 0	0 of 4	0.33	Down
Ovary	2 ± 0	0 of 4	0.50	Down
Testis	1 ± 0	0 of 4	0.30	Down
Male accessory glands	6 ± 1	0 of 4	1.10	None
Virgin spermatheca	1 ± 0	0 of 4	0.34	Down
Mated spermatheca	0 ± 0	0 of 4	0.14	Down
Adult carcass	6 ± 2	0 of 4	1.10	None
Larval CNS	1 ± 2	0 of 4	0.31	Down
Larval Salivary gland	9 ± 1	0 of 4	1.79	Up
Larval midgut	4 ± 1	0 of 4	0.79	None
Larval tubule	2 ± 1	0 of 4	0.40	None
Larval hindgut	1 ± 0	0 of 4	0.29	Down
Larval fat body	1 ± 0	0 of 4	0.30	Down
Larval trachea	2 ± 2	0 of 4	0.43	None
Larval carcass	2 ± 1	0 of 4	0.38	Down
S2 cells (growing)	20 ± 2	4 of 4	3.70	Up
Whole fly	5 ± 0	0 of 4

tre oncogene-related protein (RN-tre):

Annotation Number : CG8085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020620
Gbrowse : chr2R:9872316-9878191 (-) // 100.0 //
Probeset : 1631687_at
Accessions : protein= NP_523736; /// NP_652381; /// NP_725351;, nucleotide= NM_079012; /// NM_144124; /// NM_166028;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0020620.
BDGP gene expression has embryonic in situ data for RN-tre: 4 pix of staining in 1 body parts.
BioGrid reports that CG8085 interacts with CG9675 .
TRiP has 1 RNAi stocks for FBgn0020620 available for purchase.
VDRC has 3 RNAi stocks for FBgn0020620 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	245 ± 16	4 of 4	3.50	Up
Head	85 ± 6	4 of 4	1.20	None
Eye	73 ± 3	4 of 4	1.05	None
Thoracicoabdominal ganglion	207 ± 8	4 of 4	3.00	Up
Salivary gland	27 ± 1	3 of 4	0.40	Down
Crop	31 ± 2	4 of 4	0.40	Down
Midgut	26 ± 2	4 of 4	0.40	Down
Tubule	16 ± 0	4 of 4	0.20	Down
Hindgut	20 ± 0	4 of 4	0.30	Down
Heart	49 ± 0	4 of 4	0.71	Down
Fat body	38 ± 4	4 of 4	0.54	Down
Ovary	194 ± 5	4 of 4	2.80	Up
Testis	124 ± 5	4 of 4	1.80	Up
Male accessory glands	24 ± 3	4 of 4	0.40	Down
Virgin spermatheca	40 ± 3	4 of 4	0.58	Down
Mated spermatheca	30 ± 5	4 of 4	0.44	Down
Adult carcass	38 ± 4	4 of 4	0.50	Down
Larval CNS	281 ± 43	4 of 4	4.00	Up
Larval Salivary gland	17 ± 1	4 of 4	0.24	Down
Larval midgut	26 ± 2	4 of 4	0.37	Down
Larval tubule	17 ± 2	4 of 4	0.20	Down
Larval hindgut	30 ± 1	4 of 4	0.43	Down
Larval fat body	59 ± 7	4 of 4	0.80	None
Larval trachea	51 ± 2	4 of 4	0.73	Down
Larval carcass	22 ± 2	4 of 4	0.32	Down
S2 cells (growing)	164 ± 6	4 of 4	2.34	Up
Whole fly	70 ± 4	4 of 4

tre oncogene-related protein (RN-tre):

Annotation Number : CG8085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020620
Gbrowse : chr2R:9874545-9878191 (-) // 100.0 //
Probeset : 1625146_a_at
Accessions : protein= NP_523736; /// NP_652381; /// NP_725351;, nucleotide= NM_079012; /// NM_144124; /// NM_166028;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0020620.
BDGP gene expression has embryonic in situ data for RN-tre: 4 pix of staining in 1 body parts.
BioGrid reports that CG8085 interacts with CG9675 .
TRiP has 1 RNAi stocks for FBgn0020620 available for purchase.
VDRC has 3 RNAi stocks for FBgn0020620 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	75 ± 2	4 of 4	3.70	Up
Head	19 ± 1	4 of 4	0.90	None
Eye	18 ± 1	4 of 4	0.92	None
Thoracicoabdominal ganglion	46 ± 5	4 of 4	2.30	Up
Salivary gland	12 ± 5	0 of 4	0.59	None
Crop	11 ± 1	2 of 4	0.60	Down
Midgut	6 ± 1	1 of 4	0.30	Down
Tubule	5 ± 0	0 of 4	0.30	Down
Hindgut	7 ± 1	2 of 4	0.40	Down
Heart	16 ± 3	4 of 4	0.79	None
Fat body	14 ± 3	4 of 4	0.69	None
Ovary	33 ± 2	4 of 4	1.60	Up
Testis	39 ± 6	4 of 4	1.90	Up
Male accessory glands	10 ± 1	0 of 4	0.50	Down
Virgin spermatheca	3 ± 0	0 of 4	0.17	Down
Mated spermatheca	7 ± 0	2 of 4	0.36	Down
Adult carcass	20 ± 2	3 of 4	1.00	None
Larval CNS	42 ± 3	4 of 4	2.05	Up
Larval Salivary gland	1 ± 0	0 of 4	0.09	Down
Larval midgut	6 ± 1	1 of 4	0.31	Down
Larval tubule	5 ± 1	1 of 4	0.30	Down
Larval hindgut	5 ± 1	1 of 4	0.28	Down
Larval fat body	15 ± 1	4 of 4	0.70	None
Larval trachea	12 ± 2	4 of 4	0.60	Down
Larval carcass	5 ± 0	2 of 4	0.27	Down
S2 cells (growing)	74 ± 2	4 of 4	3.64	Up
Whole fly	20 ± 2	4 of 4

tre oncogene-related protein (RN-tre):

Annotation Number : CG8085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020620
Gbrowse : chr2R:9875053-9878191 (-) // 99.6 //
Probeset : 1622996_at
Accessions : protein= NP_523736; /// NP_652381; /// NP_725351;, nucleotide= NM_079012; /// NM_144124; /// NM_166028;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0020620.
BDGP gene expression has embryonic in situ data for RN-tre: 4 pix of staining in 1 body parts.
BioGrid reports that CG8085 interacts with CG9675 .
TRiP has 1 RNAi stocks for FBgn0020620 available for purchase.
VDRC has 3 RNAi stocks for FBgn0020620 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	155 ± 2	4 of 4	12.40	Up
Head	19 ± 3	4 of 4	1.50	None
Eye	41 ± 4	4 of 4	3.28	Up
Thoracicoabdominal ganglion	217 ± 5	4 of 4	17.30	Up
Salivary gland	22 ± 4	2 of 4	1.78	None
Crop	22 ± 2	4 of 4	1.80	Up
Midgut	27 ± 3	4 of 4	2.20	Up
Tubule	49 ± 0	4 of 4	3.90	Up
Hindgut	21 ± 2	4 of 4	1.70	Up
Heart	71 ± 5	4 of 4	5.73	Up
Fat body	42 ± 8	4 of 4	3.38	Up
Ovary	7 ± 0	3 of 4	0.60	Down
Testis	6 ± 0	0 of 4	0.50	Down
Male accessory glands	15 ± 1	1 of 4	1.20	None
Virgin spermatheca	55 ± 2	4 of 4	4.40	Up
Mated spermatheca	49 ± 7	4 of 4	3.96	Up
Adult carcass	29 ± 4	2 of 4	2.40	Up
Larval CNS	71 ± 12	4 of 4	5.72	Up
Larval Salivary gland	10 ± 1	1 of 4	0.86	None
Larval midgut	10 ± 2	1 of 4	0.86	None
Larval tubule	14 ± 2	3 of 4	1.20	None
Larval hindgut	12 ± 1	4 of 4	1.02	None
Larval fat body	26 ± 2	4 of 4	2.10	Up
Larval trachea	39 ± 5	4 of 4	3.11	Up
Larval carcass	17 ± 0	4 of 4	1.42	Up
S2 cells (growing)	33 ± 1	4 of 4	2.65	Up
Whole fly	12 ± 1	4 of 4

Looking for FBgn0020620. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720