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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020626 through 18771 annotations produced 1 hits



oxysterol binding protein (Osbp):

Annotation Number : CG6708
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020626
Gbrowse : chr3R:20760588-20763959 (-) // 100.0 //
Probeset : 1625596_at
Accessions : protein= NP_477271;, nucleotide= NM_057923;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008142 // oxysterol binding // inferred from seque
FlyMine data for FBgn0020626.
BDGP gene expression has embryonic in situ data for Osbp: 19 pix of staining in 12 body parts.
BioGrid reports that CG6708 interacts with CG7919 .
VDRC has 1 RNAi stocks for FBgn0020626 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain299 ± 184 of 4 1.40Up
Head242 ± 74 of 4 1.10None
Eye451 ± 74 of 4 2.03Up
Thoracicoabdominal ganglion334 ± 254 of 4 1.50Up
Salivary gland1320 ± 254 of 4 5.95Up
Crop423 ± 184 of 4 1.90Up
Midgut366 ± 74 of 4 1.70Up
Tubule442 ± 244 of 4 2.00Up
Hindgut309 ± 84 of 4 1.40Up
Heart445 ± 154 of 4 2.01Up
Fat body291 ± 194 of 4 1.31Up
Ovary321 ± 74 of 4 1.40Up
Testis226 ± 24 of 4 1.00None
Male accessory glands1035 ± 224 of 4 4.70Up
Virgin spermatheca344 ± 124 of 4 1.55Up
Mated spermatheca335 ± 134 of 4 1.51Up
Adult carcass374 ± 134 of 4 1.70Up
Larval CNS169 ± 114 of 4 0.77Down
Larval Salivary gland1412 ± 614 of 4 6.37Up
Larval midgut627 ± 174 of 4 2.83Up
Larval tubule413 ± 44 of 4 1.90Up
Larval hindgut490 ± 194 of 4 2.21Up
Larval fat body270 ± 194 of 4 1.20None
Larval trachea625 ± 314 of 4 2.82Up
Larval carcass485 ± 244 of 4 2.19Up
S2 cells (growing)296 ± 74 of 4 1.33Up
Whole fly221 ± 114 of 4

Looking for FBgn0020626. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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