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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020633 through 18771 annotations produced 1 hits



Minichromosome maintenance 7 (Mcm7):

Annotation Number : CG4978
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020633
Gbrowse : chr3L:8884709-8887435 (+) // 100.0 //
Probeset : 1631517_at
Accessions : protein= NP_523984;, nucleotide= NM_079260;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0020633.
BDGP gene expression has embryonic in situ data for Mcm7: 12 pix of staining in 8 body parts.
Homophila reports that CG4978 is a close match (2e-79) to human gene MCM6 (NP_005906), a gene associated with Lactase persistance/nonpersistance, 223100 (3);[Tall stature, susceptibility to], 606255 (3).
TRiP has 1 RNAi stocks for FBgn0020633 available for purchase.
VDRC has 1 RNAi stocks for FBgn0020633 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 04 of 4 0.00Down
Head27 34 of 4 0.10Down
Eye10 23 of 4 0.02Down
Thoracicoabdominal ganglion18 04 of 4 0.00Down
Salivary gland23 51 of 4 0.05Down
Crop24 34 of 4 0.10Down
Midgut38 34 of 4 0.10Down
Tubule19 71 of 4 0.00Down
Hindgut18 24 of 4 0.00Down
Heart7 02 of 4 0.02Down
Fat body29 133 of 4 0.06Down
Ovary942 154 of 4 2.00Up
Testis20 24 of 4 0.00Down
Male accessory glands12 21 of 4 0.00Down
Virgin spermatheca26 24 of 4 0.06Down
Mated spermatheca27 24 of 4 0.06Down
Adult carcass34 73 of 4 0.10Down
Larval CNS787 524 of 4 1.71Up
Larval Salivary gland255 164 of 4 0.56Down
Larval midgut65 34 of 4 0.14Down
Larval tubule47 14 of 4 0.10Down
Larval hindgut76 34 of 4 0.17Down
Larval fat body43 34 of 4 0.10Down
Larval trachea296 344 of 4 0.65Down
Larval carcass180 94 of 4 0.39Down
S2 cells (growing)251 104 of 4 0.55Down
Whole fly460 194 of 4

Looking for FBgn0020633. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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