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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020639 through 18771 annotations produced 1 hits



Lcp65Af (Lcp65Af):

Annotation Number : CG10533
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020639
Gbrowse : chr3L:6129403-6129871 (-) // 100.0 //
Probeset : 1626142_at
Accessions : protein= NP_477274;, nucleotide= NM_057926;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0020639.
VDRC has 1 RNAi stocks for FBgn0020639 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 10 of 4 0.20Down
Eye1 ± 00 of 4 0.12Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.30None
Salivary gland6 ± 30 of 4 0.70None
Crop3 ± 10 of 4 0.40None
Midgut4 ± 10 of 4 0.50None
Tubule2 ± 00 of 4 0.30Down
Hindgut2 ± 00 of 4 0.20Down
Heart1 ± 01 of 4 0.15Down
Fat body3 ± 21 of 4 0.45None
Ovary1 ± 00 of 4 0.10Down
Testis4 ± 00 of 4 0.50None
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca3 ± 00 of 4 0.40None
Mated spermatheca1 ± 00 of 4 0.16Down
Adult carcass3 ± 10 of 4 0.40None
Larval CNS1 ± 00 of 4 0.18Down
Larval Salivary gland2 ± 11 of 4 0.29None
Larval midgut4 ± 20 of 4 0.53None
Larval tubule0 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.32None
Larval fat body2 ± 10 of 4 0.30None
Larval trachea2 ± 10 of 4 0.28Down
Larval carcass312 ± 1694 of 436.48None
S2 cells (growing)1 ± 00 of 4 0.13Down
Whole fly8 ± 12 of 4

Looking for FBgn0020639. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime