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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020640 through 18771 annotations produced 1 hits



Lcp65Ae (Lcp65Ae):

Annotation Number : CG10529
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020640
Gbrowse : chr3L:6130818-6131178 (-) // 100.0 //
Probeset : 1641622_at
Accessions : protein= NP_788468;, nucleotide= NM_176290;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0020640.
VDRC has 1 RNAi stocks for FBgn0020640 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.50None
Head3 10 of 4 2.90None
Eye2 10 of 4 1.78None
Thoracicoabdominal ganglion1 00 of 4 1.30None
Salivary gland7 40 of 4 5.80None
Crop1 10 of 4 1.50None
Midgut1 00 of 4 1.10None
Tubule2 00 of 4 2.20Up
Hindgut2 10 of 4 2.00None
Heart1 00 of 4 1.53None
Fat body4 20 of 4 3.75Up
Ovary1 00 of 4 1.00None
Testis1 00 of 4 1.40None
Male accessory glands4 20 of 4 3.40None
Virgin spermatheca4 10 of 4 3.78None
Mated spermatheca4 10 of 4 3.59Up
Adult carcass4 20 of 4 3.80None
Larval CNS3 10 of 4 2.41None
Larval Salivary gland3 10 of 4 3.02None
Larval midgut3 10 of 4 2.35None
Larval tubule1 00 of 4 1.20None
Larval hindgut10 13 of 4 8.18Up
Larval fat body3 20 of 4 2.70None
Larval trachea9 92 of 4 7.53None
Larval carcass949 5264 of 4744.59None
S2 cells (growing)1 00 of 4 1.18None
Whole fly1 00 of 4

Looking for FBgn0020640. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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