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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020641 through 18771 annotations produced 1 hits



Lcp65Ad (Lcp65Ad):

Annotation Number : CG6955
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020641
Gbrowse : chr3L:6136506-6137109 (+) // 100.0 //
Probeset : 1636658_at
Accessions : protein= NP_477278;, nucleotide= NM_057930;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0020641.
BDGP gene expression has embryonic in situ data for Lcp65Ad: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0020641 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 01 of 4 1.10None
Head1 00 of 4 0.30None
Eye4 00 of 4 1.08None
Thoracicoabdominal ganglion3 10 of 4 0.70None
Salivary gland10 50 of 4 2.42None
Crop6 01 of 4 1.40None
Midgut7 11 of 4 1.70None
Tubule3 10 of 4 0.80None
Hindgut2 10 of 4 0.50None
Heart5 12 of 4 1.11None
Fat body6 21 of 4 1.39None
Ovary3 00 of 4 0.80None
Testis6 13 of 4 1.50None
Male accessory glands7 20 of 4 1.60None
Virgin spermatheca4 00 of 4 1.01None
Mated spermatheca3 10 of 4 0.83None
Adult carcass6 10 of 4 1.50None
Larval CNS2 00 of 4 0.56None
Larval Salivary gland5 10 of 4 1.29None
Larval midgut8 00 of 4 1.84None
Larval tubule3 10 of 4 0.80None
Larval hindgut7 13 of 4 1.64None
Larval fat body8 10 of 4 1.80None
Larval trachea15 64 of 4 3.44Up
Larval carcass30 34 of 4 6.76Up
S2 cells (growing)4 00 of 4 0.97None
Whole fly4 11 of 4

Looking for FBgn0020641. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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