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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0020642 through 18771 annotations produced 1 hits

Lcp65Ac (Lcp65Ac):

Annotation Number : CG6956
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020642
Gbrowse : chr3L:6137923-6138500 (+) // 100.0 //
Probeset : 1632693_at
Accessions : protein= NP_477279;, nucleotide= NM_057931;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0020642.
BDGP gene expression has embryonic in situ data for Lcp65Ac: 9 pix of staining in 4 body parts.
VDRC has 5 RNAi stocks for FBgn0020642 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 11 of 4 0.20None
Head28 84 of 4 1.40None
Eye4 10 of 4 0.21None
Thoracicoabdominal ganglion5 20 of 4 0.30None
Salivary gland13 41 of 4 0.66None
Crop8 20 of 4 0.40None
Midgut7 10 of 4 0.40None
Tubule6 00 of 4 0.30Down
Hindgut5 20 of 4 0.30None
Heart3 00 of 4 0.16None
Fat body9 50 of 4 0.47None
Ovary2 10 of 4 0.10None
Testis2 10 of 4 0.10None
Male accessory glands6 10 of 4 0.30None
Virgin spermatheca6 21 of 4 0.32None
Mated spermatheca7 01 of 4 0.38None
Adult carcass7 30 of 4 0.40None
Larval CNS6 10 of 4 0.33None
Larval Salivary gland11 10 of 4 0.58None
Larval midgut61 104 of 4 3.04Up
Larval tubule5 20 of 4 0.30None
Larval hindgut266 254 of 413.26Up
Larval fat body2 10 of 4 0.10None
Larval trachea145 1324 of 4 7.25None
Larval carcass919 4304 of 445.80None
S2 cells (growing)1 00 of 4 0.08None
Whole fly20 92 of 4

Looking for FBgn0020642. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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