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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020644 through 18771 annotations produced 2 hits



Larval cuticle protein 10 /// Lcp65Ab2 (Lcp65Ab1 /// Lcp65Ab2):

Annotation Number : CG18773
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020643 /// FBgn0020644
Gbrowse : chr3L:6142641-6143063 (+) // 100.0 // /// chr3L:6139770-6140192 (+) // 100.0 //
Probeset : 1623637_s_at
Accessions : protein= NP_524814; /// NP_788469;, nucleotide= NM_080075; /// NM_176291;
Pathway : 0005576 // extracellular region // non-traceable author statement
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0020643 /// FBgn0020644.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 2.10Up
Head1 ± 10 of 4 2.70None
Eye77 ± 314 of 4106.59None
Thoracicoabdominal ganglion1 ± 00 of 4 2.10None
Salivary gland7 ± 20 of 410.55None
Crop2 ± 10 of 4 3.40None
Midgut0 ± 00 of 4 1.30None
Tubule1 ± 00 of 4 2.40Up
Hindgut0 ± 00 of 4 1.00None
Heart3 ± 10 of 4 4.34None
Fat body2 ± 00 of 4 2.76None
Ovary1 ± 00 of 4 1.80None
Testis1 ± 10 of 4 2.70None
Male accessory glands0 ± 00 of 4 1.00None
Virgin spermatheca1 ± 00 of 4 2.45None
Mated spermatheca1 ± 00 of 4 2.52Up
Adult carcass0 ± 00 of 4 1.20None
Larval CNS14 ± 102 of 420.52None
Larval Salivary gland4 ± 20 of 4 6.28None
Larval midgut1 ± 00 of 4 1.55None
Larval tubule0 ± 00 of 4 1.00None
Larval hindgut2785 ± 2674 of 43841.90Up
Larval fat body9 ± 70 of 413.10None
Larval trachea4564 ± 10194 of 46295.79Up
Larval carcass4711 ± 6014 of 46499.14Up
S2 cells (growing)0 ± 00 of 4 1.31None
Whole fly0 ± 00 of 4



Lcp65Ab2 (Lcp65Ab2):

Annotation Number : CG18773
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020643 /// FBgn0020644
Gbrowse : chr3L:6142641-6143063 (+) // 100.0 // /// chr3L:6139770-6140192 (+) // 100.0 //
Probeset : 1626935_at
Accessions : protein= NP_524814; /// NP_788469;, nucleotide= NM_080075; /// NM_176291;
Pathway : 0005576 // extracellular region // non-traceable author statement
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0020643 /// FBgn0020644.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.80None
Head2 ± 00 of 4 0.80None
Eye15 ± 42 of 4 5.90None
Thoracicoabdominal ganglion3 ± 00 of 4 1.20None
Salivary gland6 ± 10 of 4 2.44None
Crop3 ± 00 of 4 1.40None
Midgut2 ± 00 of 4 1.10None
Tubule3 ± 00 of 4 1.40Up
Hindgut2 ± 00 of 4 1.00None
Heart2 ± 00 of 4 1.12None
Fat body4 ± 31 of 4 1.59None
Ovary1 ± 00 of 4 0.40Down
Testis2 ± 00 of 4 0.70None
Male accessory glands4 ± 20 of 4 1.70None
Virgin spermatheca5 ± 01 of 4 1.93None
Mated spermatheca5 ± 02 of 4 2.05Up
Adult carcass4 ± 10 of 4 1.80None
Larval CNS9 ± 93 of 4 3.50None
Larval Salivary gland6 ± 11 of 4 2.31None
Larval midgut5 ± 10 of 4 2.25Up
Larval tubule2 ± 10 of 4 1.00None
Larval hindgut760 ± 2184 of 4289.76Up
Larval fat body6 ± 21 of 4 2.40None
Larval trachea1154 ± 5114 of 4439.76Up
Larval carcass4765 ± 4074 of 41815.55Up
S2 cells (growing)2 ± 01 of 4 1.03None
Whole fly2 ± 00 of 4

Looking for FBgn0020644. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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