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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020645 through 18771 annotations produced 2 hits



Lcp65Aa (Lcp65Aa):

Annotation Number : CG7287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020645 /// FBgn0020646
Gbrowse : chr3L:6144432-6144741 (+) // 100.0 //
Probeset : 1629340_s_at
Accessions : protein= NP_477280;, nucleotide= NM_057932;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0020645 /// FBgn0020646.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head5 20 of 4 1.90None
Eye1 00 of 4 0.59None
Thoracicoabdominal ganglion3 10 of 4 1.10None
Salivary gland10 20 of 4 3.91Up
Crop4 10 of 4 1.70None
Midgut1 00 of 4 0.60None
Tubule4 00 of 4 1.50None
Hindgut2 00 of 4 0.80None
Heart0 00 of 4 0.30None
Fat body2 00 of 4 0.76None
Ovary4 00 of 4 1.70None
Testis3 10 of 4 1.10None
Male accessory glands5 00 of 4 2.10Up
Virgin spermatheca0 00 of 4 0.21Down
Mated spermatheca1 00 of 4 0.53None
Adult carcass1 00 of 4 0.60None
Larval CNS2 10 of 4 0.87None
Larval Salivary gland1 00 of 4 0.41None
Larval midgut1 00 of 4 0.49None
Larval tubule6 21 of 4 2.40None
Larval hindgut810 1134 of 4291.93Up
Larval fat body5 10 of 4 2.00None
Larval trachea18 81 of 4 6.59Up
Larval carcass939 1934 of 4338.41Up
S2 cells (growing)6 10 of 4 2.40Up
Whole fly2 00 of 4



Lcp65Aa (Lcp65Aa):

Annotation Number : CG7287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020645
Gbrowse : chr3L:6144432-6144741 (+) // 100.0 //
Probeset : 1625866_at
Accessions : protein= NP_477280;, nucleotide= NM_057932;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0020645.
VDRC has 3 RNAi stocks for FBgn0020645 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.90None
Head6 20 of 4 1.30None
Eye3 10 of 4 0.62None
Thoracicoabdominal ganglion8 30 of 4 1.70None
Salivary gland32 20 of 4 6.17Up
Crop13 30 of 4 2.60None
Midgut11 10 of 4 2.10Up
Tubule15 20 of 4 3.00Up
Hindgut7 00 of 4 1.40None
Heart4 10 of 4 0.94None
Fat body38 190 of 4 7.48Up
Ovary7 20 of 4 1.40None
Testis41 40 of 4 8.00Up
Male accessory glands6 00 of 4 1.20None
Virgin spermatheca20 10 of 4 4.01Up
Mated spermatheca16 30 of 4 3.25Up
Adult carcass6 10 of 4 1.30None
Larval CNS3 10 of 4 0.76None
Larval Salivary gland5 10 of 4 1.12None
Larval midgut20 20 of 4 3.94Up
Larval tubule15 30 of 4 3.10Up
Larval hindgut647 784 of 4124.53Up
Larval fat body7 20 of 4 1.50None
Larval trachea33 50 of 4 6.39Up
Larval carcass986 1914 of 4189.70Up
S2 cells (growing)27 40 of 4 5.36Up
Whole fly5 00 of 4

Looking for FBgn0020645. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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