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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020647 through 18771 annotations produced 1 hits



Krueppel target at 95D (KrT95D):

Annotation Number : CG5405
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020647
Gbrowse : chr3R:19824158-19857532 (-) // 100.0 //
Probeset : 1637517_s_at
Accessions : protein= NP_001163709; /// NP_524473; /// NP_732933; /// NP_732934; /// NP_732935;, nucleotide= NM_001170238; /// NM_079749; /// NM_170108; /// NM_170109; /// NM_170110;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0020647.
BDGP gene expression has embryonic in situ data for KrT95D: 31 pix of staining in 15 body parts.
VDRC has 3 RNAi stocks for FBgn0020647 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain192 ± 54 of 4 1.10Up
Head103 ± 44 of 4 0.60Down
Eye164 ± 104 of 4 0.97None
Thoracicoabdominal ganglion163 ± 164 of 4 1.00None
Salivary gland131 ± 94 of 4 0.77Down
Crop74 ± 64 of 4 0.40Down
Midgut44 ± 44 of 4 0.30Down
Tubule354 ± 404 of 4 2.10Up
Hindgut57 ± 04 of 4 0.30Down
Heart61 ± 24 of 4 0.36Down
Fat body82 ± 124 of 4 0.48Down
Ovary153 ± 34 of 4 0.90None
Testis369 ± 74 of 4 2.20Up
Male accessory glands280 ± 204 of 4 1.60Up
Virgin spermatheca124 ± 44 of 4 0.73Down
Mated spermatheca121 ± 124 of 4 0.71Down
Adult carcass496 ± 254 of 4 2.90Up
Larval CNS81 ± 124 of 4 0.48Down
Larval Salivary gland121 ± 134 of 4 0.71Down
Larval midgut167 ± 124 of 4 0.99None
Larval tubule132 ± 44 of 4 0.80Down
Larval hindgut90 ± 34 of 4 0.53Down
Larval fat body235 ± 54 of 4 1.40Up
Larval trachea34 ± 24 of 4 0.20Down
Larval carcass109 ± 234 of 4 0.65None
S2 cells (growing)403 ± 304 of 4 2.37Up
Whole fly170 ± 64 of 4

Looking for FBgn0020647. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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