Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020762 through 18771 annotations produced 1 hits



ABC transporter expressed in trachea (Atet):

Annotation Number : CG2969
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020762
Gbrowse : chr2L:4333925-4345411 (+) // 100.0 //
Probeset : 1629559_s_at
Accessions : protein= NP_001097078; /// NP_001097079; /// NP_523471; /// NP_722971;, nucleotide= NM_001103608; /// NM_001103609; /// NM_078747; /// NM_164580;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0020762.
BDGP gene expression has embryonic in situ data for Atet: 47 pix of staining in 12 body parts.
Homophila reports that CG2969 is a close match (7e-11) to human gene ABCB2;PSF1;RING4;TAP1 (NP_000584), a gene associated with Bare lymphocyte syndrome, type I, 604571 (3).
VDRC has 3 RNAi stocks for FBgn0020762 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain268 14 of 4 3.20Up
Head203 44 of 4 2.40Up
Eye330 174 of 4 3.97Up
Thoracicoabdominal ganglion245 74 of 4 2.90Up
Salivary gland137 104 of 4 1.65Up
Crop151 64 of 4 1.80Up
Midgut135 64 of 4 1.60Up
Tubule59 54 of 4 0.70Down
Hindgut61 34 of 4 0.70Down
Heart211 34 of 4 2.54Up
Fat body273 224 of 4 3.28Up
Ovary54 34 of 4 0.70Down
Testis82 34 of 4 1.00None
Male accessory glands45 54 of 4 0.50Down
Virgin spermatheca102 54 of 4 1.23Up
Mated spermatheca240 154 of 4 2.89Up
Adult carcass163 84 of 4 2.00Up
Larval CNS118 64 of 4 1.42Up
Larval Salivary gland45 34 of 4 0.54Down
Larval midgut246 384 of 4 2.96Up
Larval tubule211 184 of 4 2.50Up
Larval hindgut99 134 of 4 1.19None
Larval fat body39 74 of 4 0.50Down
Larval trachea134 354 of 4 1.61None
Larval carcass69 64 of 4 0.83None
S2 cells (growing)162 14 of 4 1.95Up
Whole fly83 24 of 4

Looking for FBgn0020762. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime