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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020765 through 18771 annotations produced 1 hits



Acp65Aa (Acp65Aa):

Annotation Number : CG10297
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020765
Gbrowse : chr3L:6145149-6145845 (-) // 98.87 //
Probeset : 1639418_at
Accessions : protein= NP_477282;, nucleotide= NM_057934;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008012
FlyMine data for FBgn0020765.
BDGP gene expression has embryonic in situ data for Acp65Aa: 6 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0020765 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 10 of 4 0.50None
Head15 11 of 4 0.80None
Eye13 13 of 4 0.76None
Thoracicoabdominal ganglion5 21 of 4 0.30None
Salivary gland15 60 of 4 0.83None
Crop19 11 of 4 1.00None
Midgut15 20 of 4 0.80None
Tubule8 10 of 4 0.50Down
Hindgut7 10 of 4 0.40None
Heart39 282 of 4 2.14None
Fat body21 32 of 4 1.15None
Ovary5 20 of 4 0.30None
Testis1 00 of 4 0.10None
Male accessory glands7 20 of 4 0.40None
Virgin spermatheca17 13 of 4 0.94None
Mated spermatheca11 50 of 4 0.65None
Adult carcass121 454 of 4 6.60None
Larval CNS6 20 of 4 0.37None
Larval Salivary gland10 20 of 4 0.57None
Larval midgut19 30 of 4 1.04None
Larval tubule11 10 of 4 0.60None
Larval hindgut20 30 of 4 1.10None
Larval fat body4 10 of 4 0.30None
Larval trachea13 111 of 4 0.73None
Larval carcass96 314 of 4 5.27None
S2 cells (growing)11 10 of 4 0.61None
Whole fly18 122 of 4

Looking for FBgn0020765. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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