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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0020880 through 18771 annotations produced 1 hits



(CG7179):

Annotation Number : CG7179
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020880
Gbrowse : chr2L:7775803-7778027 (-) // 100.0 //
Probeset : 1623427_at
Accessions : protein= NP_723315;, nucleotide= NM_164771;
FlyMine data for FBgn0020880.
BDGP gene expression has embryonic in situ data for CG7179: 17 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0020880 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.50None
Head6 ± 10 of 4 1.00None
Eye3 ± 10 of 4 0.57None
Thoracicoabdominal ganglion4 ± 20 of 4 0.60None
Salivary gland56 ± 63 of 4 8.65Up
Crop8 ± 20 of 4 1.30None
Midgut10 ± 11 of 4 1.60None
Tubule15 ± 12 of 4 2.30Up
Hindgut116 ± 64 of 418.00Up
Heart3 ± 10 of 4 0.47None
Fat body11 ± 40 of 4 1.71None
Ovary5 ± 01 of 4 0.90None
Testis3 ± 10 of 4 0.50None
Male accessory glands10 ± 20 of 4 1.60None
Virgin spermatheca7 ± 10 of 4 1.15None
Mated spermatheca7 ± 12 of 4 1.11None
Adult carcass8 ± 30 of 4 1.30None
Larval CNS5 ± 40 of 4 0.88None
Larval Salivary gland9 ± 20 of 4 1.41None
Larval midgut30 ± 24 of 4 4.70Up
Larval tubule14 ± 03 of 4 2.30Up
Larval hindgut132 ± 104 of 420.42Up
Larval fat body10 ± 10 of 4 1.60None
Larval trachea7 ± 40 of 4 1.13None
Larval carcass13 ± 13 of 4 2.06Up
S2 cells (growing)6 ± 10 of 4 0.98None
Whole fly6 ± 11 of 4

Looking for FBgn0020880. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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