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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0020906 through 18771 annotations produced 1 hits


Jonah 25B (Jon25Bi):

Annotation Number : CG8867
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020906
Gbrowse : chr2L:4954070-4955353 (-) // 100.0 //
Probeset : 1627869_at
Accessions : protein= NP_001033873; /// NP_523477;, nucleotide= NM_001038784; /// NM_078753;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004175 // endopeptidase activity // non-tracea
FlyMine data for FBgn0020906.
BDGP gene expression has embryonic in situ data for Ser4: 4 pix of staining in 1 body parts.
Homophila reports that CG8867 is a close match (9e-11) to human gene PC;PROC (NP_000303), a gene associated with Thrombophilia due to protein C deficiency, autosomal dominant, 176860 (3);Thrombophilia due to protein C deficiency, autosomal recessive, 612304 (3).
VDRC has 2 RNAi stocks for FBgn0020906 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye4 ± 41 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland17 ± 20 of 4 0.01Down
Crop3 ± 10 of 4 0.00Down
Midgut5783 ± 2944 of 4 3.90Up
Tubule2 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart2 ± 10 of 4 0.00Down
Fat body2 ± 30 of 4 0.00Down
Ovary0 ± 00 of 4 0.00Down
Testis6 ± 20 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca3 ± 10 of 4 0.00Down
Adult carcass14 ± 40 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut5190 ± 1504 of 4 3.50Up
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut5 ± 20 of 4 0.00Down
Larval fat body30 ± 271 of 4 0.00Down
Larval trachea51 ± 941 of 4 0.03Down
Larval carcass2 ± 00 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly1484 ± 2524 of 4

Looking for FBgn0020906. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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