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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0020907 through 18771 annotations produced 1 hits

/// Calexcitin (CG10587 /// Scp2):

Annotation Number : CG14904
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020907
Gbrowse : chr3R:12400258-12409382 (-) // 100.0 //
Probeset : 1635398_at
Accessions : protein= NP_524381;, nucleotide= NM_079657;
Pathway : 0016529 // sarcoplasmic reticulum // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from dir
FlyMine data for FBgn0020907.
BioGrid reports that CG14904 interacts with CG3052 CG15071 CG1970 CG2146 CG3924 CG40127 CG5183 CG6425 CG6588 CG6770 CG7007 CG7361 CG7937 CG9113 CG9609 .
VDRC has 2 RNAi stocks for FBgn0020907 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1442 354 of 4 7.40Up
Head1693 784 of 4 8.70Up
Eye4274 1074 of 422.00Up
Thoracicoabdominal ganglion3065 1004 of 415.80Up
Salivary gland14 40 of 4 0.07Down
Crop4 00 of 4 0.00Down
Midgut7 10 of 4 0.00Down
Tubule3687 13474 of 419.00Up
Hindgut4 12 of 4 0.00Down
Heart13 24 of 4 0.07Down
Fat body89 1671 of 4 0.46None
Ovary2 00 of 4 0.00Down
Testis3 00 of 4 0.00Down
Male accessory glands5 10 of 4 0.00Down
Virgin spermatheca4 20 of 4 0.02Down
Mated spermatheca4 10 of 4 0.02Down
Adult carcass51 94 of 4 0.30Down
Larval CNS141 204 of 4 0.73Down
Larval Salivary gland5 11 of 4 0.03Down
Larval midgut14 42 of 4 0.07Down
Larval tubule3962 564 of 420.40Up
Larval hindgut11 33 of 4 0.06Down
Larval fat body12 52 of 4 0.10Down
Larval trachea106 1484 of 4 0.55None
Larval carcass62 74 of 4 0.32Down
S2 cells (growing)3 00 of 4 0.02Down
Whole fly194 84 of 4

Looking for FBgn0020907. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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